Teacher
Created An Answer With At Least 3 Up-Votes
Awarded 2253 times (see all awards). Earned by the
following contributors:
9 years, 3 months ago
WEHI, Melbourne, Australia
A: FDR and padj in deseq and edger
9 years, 3 months ago
WEHI, Melbourne, Australia
Effect size similar to Cohen's d in limma
9 years, 3 months ago
The city by the bay
Possible implementation of multifactorial contrasts in limma regarding a microarray dataset
9 years, 3 months ago
Icahn School of Medicine at Mount Sinai…
Correct assumptions of using limma moderated t-test
9 years, 3 months ago
United States
How to get Genomic feature in txdb format from biomart for sacCer2 (EF4) assembly?
9 years, 3 months ago
United States
A: How to get Genomic feature in txdb format from biomart for sacCer2 (EF4) assembl
9 years, 3 months ago
The city by the bay
limma Time Course Experiment with many time points
9 years, 3 months ago
WEHI, Melbourne, Australia
Effect size similar to Cohen's d in limma
9 years, 3 months ago
United States
Interpreting Contrast Comparisons in edgeR
9 years, 3 months ago
The city by the bay
A: Limma model for 4 factor (2*2*2*2) design to detect the factor specific effect a
9 years, 3 months ago
United States
Interpreting Contrast Comparisons in edgeR
9 years, 3 months ago
United States
A: Interpreting Contrast Comparisons in edgeR
9 years, 3 months ago
The city by the bay
modeling zero-dominated RNA-seq with voom/limma and hurdle models (pscl)
9 years, 3 months ago
United States
How to find particular types of overlap with GenomicRanges
9 years, 3 months ago
The city by the bay
A: Csaw : filter windows based on matched negative control
9 years, 3 months ago
WEHI, Melbourne, Australia
Effect size similar to Cohen's d in limma
9 years, 3 months ago
University of Oxford
Is it common to get all 0 values when running the randomForest step in GOexpress?
9 years, 3 months ago
WEHI, Melbourne, Australia
A: Estimating and removing batch effects from rna-seq dataset
9 years, 3 months ago
The city by the bay
A: EdgeR - RNA-Seq time course analysis - Testing main and interaction effects and
9 years, 3 months ago
The city by the bay
A: Calculating contrasts for continuous variable anad interaction effect in Limma
9 years, 3 months ago
United States
A: Finding gene lengths of mm10 to calculate rpkm grom count matrix of rna-seq data
9 years, 4 months ago
WEHI, Melbourne, Australia
A: Limma camera function never gives any differentially expressed gene sets
9 years, 4 months ago
WEHI, Melbourne, Australia
Effect size similar to Cohen's d in limma
9 years, 4 months ago
WEHI, Melbourne, Australia
Correct assumptions of using limma moderated t-test
9 years, 4 months ago
WEHI, Melbourne, Australia
GoSeq: Wallenius 264 overrepresented sampling 0?
9 years, 4 months ago
WEHI, Melbourne, Australia
How to use normalized values by EDASeq in edgeR?
9 years, 4 months ago
WEHI, Melbourne, Australia
Using limma when continuous and categorical confounders are present at the same time (e.g.age, gender)
9 years, 4 months ago
WEHI, Melbourne, Australia
Difference in Goodness of fit when applying limma to one-colour vs. two-colour arrays
9 years, 4 months ago
WEHI, Melbourne, Australia
Adjust p-values of a matrix of p-values
9 years, 4 months ago
WEHI, Melbourne, Australia
Confidence intervals on edgeR logFC
9 years, 4 months ago
WEHI, Melbourne, Australia
How to read single red channel data with Limma
9 years, 4 months ago
WEHI, Melbourne, Australia
Do the outputs of Limma's competitive gene set methods (camera, romer) require a mutliple testing correction?
9 years, 4 months ago
WEHI, Melbourne, Australia
voom + removeBatchEffect + gene clustering
9 years, 4 months ago
WEHI, Melbourne, Australia
Using of limma moderated t-test with "corrected" expression matrix resulting from ComBat batch effect correction
9 years, 4 months ago
The city by the bay
Support for offsets in cpm and voom functions?
9 years, 4 months ago
The city by the bay
limma voom accessing normalised counts tables
9 years, 4 months ago
The city by the bay
modeling zero-dominated RNA-seq with voom/limma and hurdle models (pscl)
9 years, 4 months ago
The city by the bay
LIMMA: interpreting interaction terms in an unbalanced factorial design with repeated measures
9 years, 4 months ago
The city by the bay
Correct construction of design matrix in limma for multiple contrasts for gene expression profiling
9 years, 4 months ago
The city by the bay
what conditions affect my gene (with limma?)
9 years, 4 months ago
The city by the bay
Obtaining Differentially expressed gene lists at a Fold change and FDR cut-off
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6