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9 years, 2 months ago
The city by the bay
Possible implementation of multifactorial contrasts in limma regarding a microarray dataset
9 years, 2 months ago
United States
A: upgrade to Bioconductor version 3.2 (under R version 3.2.2)
9 years, 2 months ago
University of Padova
RUVseq PCA on raw data, whereas DESeq suggests stabilization
9 years, 2 months ago
United States
Error: This function only works when used with the ensembl BioMart.
9 years, 2 months ago
United States
how to extract Granges not overlapping with other ganges?
9 years, 2 months ago
United States
how to extract Granges not overlapping with other ganges?
9 years, 2 months ago
United States
A: Error: This function only works when used with the ensembl BioMart.
9 years, 2 months ago
Novartis Institutes for BioMedical Rese…
DEXSeq and Independent filtering
9 years, 2 months ago
United States
how to extract Granges not overlapping with other ganges?
9 years, 2 months ago
The city by the bay
A: DESeq and Limma+Voom Normalization for Rna-Seq Data Using Ercc Spike-In
9 years, 2 months ago
United States
how to extract Granges not overlapping with other ganges?
9 years, 2 months ago
9 years, 2 months ago
United States
how can I install packages in docker/R/bioconductor so that they persist?
9 years, 2 months ago
United States
C: how can I install packages in docker/R/bioconductor so that they persist?
9 years, 2 months ago
Barcelona/Universitat Pompeu Fabra
Best method/package for Gene Set Enrichment Analysis in microarrays?
9 years, 2 months ago
Barcelona/Universitat Pompeu Fabra
A: Best method/package for Gene Set Enrichment Analysis in microarrays?
9 years, 2 months ago
United States
how to extract Granges not overlapping with other ganges?
9 years, 2 months ago
WEHI, Melbourne, Australia
Effect size similar to Cohen's d in limma
9 years, 2 months ago
The city by the bay
Possible implementation of multifactorial contrasts in limma regarding a microarray dataset
9 years, 2 months ago
The city by the bay
A: Help with design matrix for two cell types, multiple treatments
9 years, 2 months ago
United States
A: .fastq to .txt conversion for EdgeR package and merging two paired end sequence
9 years, 2 months ago
Icahn School of Medicine at Mount Sinai…
FDR and padj in deseq and edger
9 years, 2 months ago
United States
how to extract Granges not overlapping with other ganges?
9 years, 2 months ago
The city by the bay
Possible implementation of multifactorial contrasts in limma regarding a microarray dataset
9 years, 2 months ago
The city by the bay
Possible implementation of multifactorial contrasts in limma regarding a microarray dataset
9 years, 2 months ago
United States
A: Unable to use qvalue. Estimated pi0 is <=0
9 years, 2 months ago
The city by the bay
A: getting a list of probe IDs from topTable (limma version 3.18.13)
9 years, 2 months ago
The city by the bay
A: Limma get all DE genes or filter by logFC
9 years, 3 months ago
The city by the bay
Possible implementation of multifactorial contrasts in limma regarding a microarray dataset
9 years, 3 months ago
Novartis Institutes for BioMedical Rese…
A: Translating model formula from DESeq to DEXSeq
9 years, 3 months ago
United States
how to extract Granges not overlapping with other ganges?
9 years, 3 months ago
Argentina/Cordoba/Universidad Católica …
RDAVIDWebService Error 301: Moved Permanently
9 years, 3 months ago
United States
Quality control on RNA-Seq (level 3) data from TCGA
9 years, 3 months ago
United States
A: Quality control on RNA-Seq (level 3) data from TCGA
9 years, 3 months ago
Italy
A: makeTxDbFromBiomart Error: 1: Space required after the Public Identifier
9 years, 3 months ago
Icahn School of Medicine at Mount Sinai…
FDR and padj in deseq and edger
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