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following contributors:
9 years, 1 month ago
China/Guangzhou/Southern Medical Univer…
A: How to do simple Fisher' exact test for overlapped genomic interval in R?
9 years, 1 month ago
The city by the bay
A: Is the following a correct usage of Limma's removeBatchEffect() for clustered he
9 years, 1 month ago
WEHI, Melbourne, Australia
A: How to determine which edgeR glmFit and glmQLFit are better
9 years, 1 month ago
The city by the bay
Csaw : filter windows based on matched negative control
9 years, 1 month ago
The city by the bay
A: edgeR no residual degrees of freedom for a specific row of numbers in dispCoxRei
9 years, 1 month ago
The city by the bay
Csaw : filter windows based on matched negative control
9 years, 1 month ago
United States
A: Deseq2 results discrepancies because of versions of R
9 years, 1 month ago
United States
A: DEseq2 - Use normalized DEseq2 counts to plot most expressed genes per group
9 years, 1 month ago
The city by the bay
A: Design matrix for continuous independent variable in limma
9 years, 1 month ago
The city by the bay
Csaw : filter windows based on matched negative control
9 years, 1 month ago
EMBL European Molecular Biology Laborat…
A: Deseq2 error estimating size factors -- zeros in count matrix
9 years, 1 month ago
United States
A: Deseq2 error estimating size factors -- zeros in count matrix
9 years, 1 month ago
United States
Quantile normalization + sva for microarray experiment
9 years, 1 month ago
United States
Quantile normalization + sva for microarray experiment
9 years, 1 month ago
The city by the bay
A: limma - complex design with paired samples, sex and batch effect
9 years, 1 month ago
The city by the bay
Csaw : filter windows based on matched negative control
9 years, 1 month ago
The city by the bay
Csaw : filter windows based on matched negative control
9 years, 1 month ago
The city by the bay
A: EdgeR cpm: factor of 2 when adjusting library size?
9 years, 1 month ago
Icahn School of Medicine at Mount Sinai…
FDR and padj in deseq and edger
9 years, 1 month ago
The city by the bay
Csaw : filter windows based on matched negative control
9 years, 1 month ago
The city by the bay
A: Limma : design and contrast for a timecourse experiment with 2 cell lines
9 years, 1 month ago
Zentrum für Molekularbiologie, Universi…
Normalization methodology in DESeq/DESeq2 vs edgeR
9 years, 2 months ago
WEHI, Melbourne, Australia
A: Suggestions for non-specific filtering criteria with limma
9 years, 2 months ago
The city by the bay
A: Batch with only one sample or condition
9 years, 2 months ago
Italy
makeTxDbFromBiomart Error: 1: Space required after the Public Identifier
9 years, 2 months ago
WEHI, Melbourne, Australia
A: Error when fitting linear model with technical replicates and blocking variable
9 years, 2 months ago
United States
A: DESeq2 Factorial Design correcting for Batch + Lane + RIN
9 years, 2 months ago
United States
How to find the amino acid codon corresponding to a translated genomic position
9 years, 2 months ago
The city by the bay
Possible implementation of multifactorial contrasts in limma regarding a microarray dataset
9 years, 2 months ago
WEHI, Melbourne, Australia
A: Interpretation of mroast gene set analysis in R and appropriate use of the funct
9 years, 2 months ago
United States
Error: This function only works when used with the ensembl BioMart.
9 years, 2 months ago
United States
A: what is the difference between "pd.mogene.2.0.st" and "mogene20sttranscriptclust
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