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8 years, 9 months ago
Icahn School of Medicine at Mount Sinai…
DE for genes with very low counts using limma.
8 years, 9 months ago
Icahn School of Medicine at Mount Sinai…
How to use removeBatchEffect for removing effect of multiple confounding variables
8 years, 9 months ago
United States
Does DESeq2 or edgeR take care of random effect in the GLM
8 years, 9 months ago
United States
Possible ways of performing differential gene expression and analysis of RNA-Seq data from normalized counts of RSEM software
8 years, 9 months ago
United States
DESeq2: Excluding results of specific contrasts from another set of results
8 years, 9 months ago
United States
DESeq2: Question regarding changes between Bioconductor 3.2 and 3.4 or recent version changes
8 years, 9 months ago
United States
DESeq2 results(): 'name' argument and ?equivalent? numeric contrast produce different results
8 years, 9 months ago
United States
Analyzing microbiome data (many zero-counts) using DESeq2
8 years, 9 months ago
United States
DESeq2: add annotations (from data frame) to DESeqDataSet
8 years, 9 months ago
United States
GenomicAlignments is too slow with summarizeOverlaps
8 years, 9 months ago
United States
AnnotationHub: two broad peaks from same url are not the same
8 years, 9 months ago
United States
readGAlignmentPairs slow in problematic region
8 years, 9 months ago
United States
How to get Genomic feature in txdb format from biomart for sacCer2 (EF4) assembly?
8 years, 9 months ago
United States
How to deal with Affymetrix GeneChip probeids that map to multiple genes
8 years, 9 months ago
United States
Interpretation of voom limma's intercept coefficient
8 years, 9 months ago
United States
featureCount - very less Successfully assigned reads
8 years, 9 months ago
United States
Converting Protein Accessions Into Protein Symbols
8 years, 9 months ago
United States
Error: This function only works when used with the ensembl BioMart.
8 years, 9 months ago
United States
How to compare result of fisher.test() with another numeric value in R ?
8 years, 9 months ago
United States
including information indicating upregulation/downregulation of genes in goana()
8 years, 9 months ago
United States
Error: This function only works when used with the ensembl BioMart.
8 years, 9 months ago
United States
what is the difference between "pd.mogene.2.0.st" and "mogene20sttranscriptcluster.db"?
8 years, 9 months ago
United States
how to extract Granges not overlapping with other ganges?
8 years, 9 months ago
United States
Voom: estimation of mean-variance relationship with gene expression data normalized with methods other than cpm
8 years, 9 months ago
United States
Best method/package for Gene Set Enrichment Analysis in microarrays?
8 years, 9 months ago
8 years, 9 months ago
EMBL European Molecular Biology Laborat…
package specifically dedicated to a manuscript
8 years, 9 months ago
EMBL European Molecular Biology Laborat…
Processing imaging data from high throughput compound screen with EBImage
8 years, 9 months ago
United States
WGCNA - Signed vs signed hybrid networks
8 years, 9 months ago
United States
A: [DESeq2] Best way to select the optimal fitType for dispersion estimates?
8 years, 9 months ago
The city by the bay
A: Clustering with differentially expressed genes in RNAseq
8 years, 9 months ago
United States
How to compare result of fisher.test() with another numeric value in R ?
8 years, 9 months ago
United States
A: PDCD1 missing from TxDb.Hsapiens.UCSC.hg38.knownGene?
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