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Created An Answer With At Least 3 Up-Votes
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following contributors:
8 years, 9 months ago
Switzerland
Create custom IdeogramTrack (Gviz)
8 years, 9 months ago
Heidelberg
Possible to incorporate the sign or direction of an effect in the IHW covariate?
8 years, 9 months ago
Zentrum für Molekularbiologie, Universi…
DESeq2 with paired samples - problem with the design
8 years, 9 months ago
Zentrum für Molekularbiologie, Universi…
Normalization methodology in DESeq/DESeq2 vs edgeR
8 years, 9 months ago
Zentrum für Molekularbiologie, Universi…
DEXSeq Usage and Expression Confusion
8 years, 9 months ago
Norway
Is ComBat introducing a signal where there is none?
8 years, 9 months ago
WEHI, Melbourne, Australia
Differences between limma voom E values and edgeR cpm values?
8 years, 9 months ago
WEHI, Melbourne, Australia
A: Is filtering necessary to extract significant DE genes with limma ?
8 years, 9 months ago
CUNY Graduate School of Public Health a…
Integrated genomic analysis - mRNA, proteomics, flow, miRNA-seq
8 years, 9 months ago
United States
A: Questions regarding SVA batch effect normalizazion into DeSeq2 workflow
8 years, 9 months ago
WEHI, Melbourne, Australia
A: EdgeR returns small logFC values when using GLM approach
8 years, 9 months ago
Germany
Problem using sva with limma for microarray DE analysis
8 years, 10 months ago
The city by the bay
Using edgeR or DESeq2 to analyze allele-specific expression?
8 years, 10 months ago
United States
How to compare result of fisher.test() with another numeric value in R ?
8 years, 10 months ago
United States
A: PCA plot on DE genes do not separate samples. DESeq2.
8 years, 10 months ago
WEHI, Melbourne, Australia
Differences between limma voom E values and edgeR cpm values?
8 years, 10 months ago
Seattle, WA, United States
Generating a proper TxDb instance from NCBI GFF Annotations File
8 years, 10 months ago
United States
A: BPPARAM = bpparam() takes longer than using BPPARAM = SerialParam()
8 years, 10 months ago
United States
Perform limma on a subset of genes of interest
8 years, 10 months ago
WEHI, Melbourne, Australia
Differences between limma voom E values and edgeR cpm values?
8 years, 10 months ago
(Private Address)
A: How to transform cytometry data from CSV and not FCS file?
8 years, 10 months ago
The city by the bay
Using edgeR or DESeq2 to analyze allele-specific expression?
8 years, 10 months ago
The city by the bay
Using edgeR or DESeq2 to analyze allele-specific expression?
8 years, 10 months ago
The city by the bay
A: Does limma calculate pvalues using log2 fold changes or with linear values?
8 years, 10 months ago
WEHI, Melbourne, Australia
A: edgeR glmLRT and interaction effect: an example
8 years, 10 months ago
EMBL Heidelberg
Restricting seqlevels to chr1-chr22, chrX, chrY in TxDb from UCSC returns more genes than without restriction
8 years, 10 months ago
EMBL Heidelberg
A: Any method can coerce "list" object to GRanges [reproducible example is included
8 years, 10 months ago
WEHI, Melbourne, Australia
A: Trouble identifying differentially expressed genes on Affymetrix Human Gene 2.0.
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