Bioconductor Forum

Gordon Smyth 52k

8 years, 9 months ago

WEHI, Melbourne, Australia

Calculating a p value by permutation analysis

Gordon Smyth 52k

8 years, 9 months ago

WEHI, Melbourne, Australia

limma-voom for miRNA seq

Gordon Smyth 52k

8 years, 9 months ago

WEHI, Melbourne, Australia

Using of limma moderated t-test with "corrected" expression matrix resulting from ComBat batch effect correction

Gordon Smyth 52k

8 years, 9 months ago

WEHI, Melbourne, Australia

limma-voom when testing differential expression of a subset of genes.

Gordon Smyth 52k

8 years, 9 months ago

WEHI, Melbourne, Australia

Error when fitting linear model with technical replicates and blocking variable

Gordon Smyth 52k

8 years, 9 months ago

WEHI, Melbourne, Australia

Counting ambiguously mapped reads per feature

Gordon Smyth 52k

8 years, 9 months ago

WEHI, Melbourne, Australia

Normalization methodology in DESeq/DESeq2 vs edgeR

Gordon Smyth 52k

8 years, 9 months ago

WEHI, Melbourne, Australia

Appropriate ways to filter counts data for voom/limma

Gordon Smyth 52k

8 years, 9 months ago

WEHI, Melbourne, Australia

edgeR cpm filter with >1 factor

Gordon Smyth 52k

8 years, 9 months ago

WEHI, Melbourne, Australia

how to export data as excel file from plotSmear when using edgeR

Gordon Smyth 52k

8 years, 9 months ago

WEHI, Melbourne, Australia

Effect size similar to Cohen's d in limma

Gordon Smyth 52k

8 years, 9 months ago

WEHI, Melbourne, Australia

limma experimental design

Gordon Smyth 52k

8 years, 9 months ago

WEHI, Melbourne, Australia

Confidence intervals on edgeR logFC

Gordon Smyth 52k

8 years, 9 months ago

WEHI, Melbourne, Australia

FDR and padj in deseq and edger

Gordon Smyth 52k

8 years, 9 months ago

WEHI, Melbourne, Australia

Differences between edgeR's and limma+voom's implementation of camera/roast/romer

Gordon Smyth 52k

8 years, 9 months ago

WEHI, Melbourne, Australia

Fit a multinomial to RNA-seq count data

Gordon Smyth 52k

8 years, 9 months ago

WEHI, Melbourne, Australia

Test whether expression levels of two gene sets are significantly different

Gordon Smyth 52k

8 years, 9 months ago

WEHI, Melbourne, Australia

Possible ways of performing differential gene expression and analysis of RNA-Seq data from normalized counts of RSEM software

Gordon Smyth 52k

8 years, 9 months ago

WEHI, Melbourne, Australia

Trouble identifying differentially expressed genes on Affymetrix Human Gene 2.0.ST using R with oligo and limma package

Gordon Smyth 52k

8 years, 9 months ago

WEHI, Melbourne, Australia

Diffbind: edgeR or DESeq2 ?

Gordon Smyth 52k

8 years, 9 months ago

WEHI, Melbourne, Australia

Differential expression of FPKM from RNA-seq data using limma and voom()

Gordon Smyth 52k

8 years, 9 months ago

WEHI, Melbourne, Australia

modeling heteroscedasticity in limma-voom for RNA-Seq data analysis

Gordon Smyth 52k

8 years, 9 months ago

WEHI, Melbourne, Australia

Please share me your helpful comments with edgeR analysis without replicate

Gordon Smyth 52k

8 years, 9 months ago

WEHI, Melbourne, Australia

how to use "non-standard" species for KEGG / GO analysis in limma?

Gordon Smyth 52k

8 years, 9 months ago

WEHI, Melbourne, Australia

seeking a paper or journal review about repeated multiple testing for Biological ChIP-seq replicates?

Gordon Smyth 52k

8 years, 9 months ago

WEHI, Melbourne, Australia

limma; Only fit list of certain genes/ filter eSet

Hervé Pagès 16k

8 years, 9 months ago

Seattle, WA, United States

Memory-efficient method to calculate GC content of millions of GRanges

Hervé Pagès 16k

8 years, 9 months ago

Seattle, WA, United States

How do I merge a list of GRanges?

Hervé Pagès 16k

8 years, 9 months ago

Seattle, WA, United States

XStringSet operations discard names - how to address?

Hervé Pagès 16k

8 years, 9 months ago

Seattle, WA, United States

makeTxDbFromUCSC fails to download refLink table

Hervé Pagès 16k

8 years, 9 months ago

Seattle, WA, United States

kmer and zscore calculation

Hervé Pagès 16k

8 years, 9 months ago

Seattle, WA, United States

Generating a proper TxDb instance from NCBI GFF Annotations File

Hervé Pagès 16k

8 years, 9 months ago

Seattle, WA, United States

overlapsAny for elements in GRangesList

Hervé Pagès 16k

8 years, 9 months ago

Seattle, WA, United States

how much positions overlapped for each pair of the pairs obtained by findoverlap.

Hervé Pagès 16k

8 years, 9 months ago

Seattle, WA, United States

pairwiseAlignments coordinate mapping?

Jiang, Mike ★ 1.3k

8 years, 9 months ago

(Private Address)

parsing flowFrame@description in flowCore

davide risso ▴ 980

8 years, 9 months ago

University of Padova

RUVseq PCA on raw data, whereas DESeq suggests stabilization