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8 years, 9 months ago
The city by the bay
RNA-seq analysis using EdgeR- I need to make sure that the codes that I use to analyze the data are correct
8 years, 9 months ago
The city by the bay
Csaw : filter windows based on matched negative control
8 years, 9 months ago
United Kingdom
biomaRt: no access to Ensembl_75 (GRCh37.p13)
8 years, 9 months ago
United States
finding overlapping regions within 2 different bed files with different features
8 years, 9 months ago
United States
Any way to proceed duplicate removal for list of GRanges object ?
8 years, 9 months ago
United States
Offline loading of BiocInstaller or depending packages and connection timeout
8 years, 9 months ago
United States
Plotting only intergenic reads on chromosomes?
8 years, 9 months ago
United States
getting the longest transcript by gene from Refseq
8 years, 9 months ago
United States
IRanges, Partitioning by End function not found.
8 years, 9 months ago
United States
How to convert a GRangesList object into a GRanges object?
8 years, 9 months ago
United States
BPPARAM = bpparam() takes longer than using BPPARAM = SerialParam()
8 years, 9 months ago
United States
bplapply stalling upon error with large data objects
8 years, 9 months ago
United States
Filtering lowly expressed genes in voom-limma analysis
8 years, 9 months ago
United States
Perform limma on a subset of genes of interest
8 years, 9 months ago
United States
Counting ambiguously mapped reads per feature
8 years, 9 months ago
EMBL Heidelberg
Restricting seqlevels to chr1-chr22, chrX, chrY in TxDb from UCSC returns more genes than without restriction
8 years, 9 months ago
Italy
makeTxDbFromBiomart Error: 1: Space required after the Public Identifier
8 years, 9 months ago
United States
Collapse/Reduce in GRanges by Metadata Column
8 years, 9 months ago
United States
How to find particular types of overlap with GenomicRanges
8 years, 9 months ago
United States
How to find the amino acid codon corresponding to a translated genomic position
8 years, 9 months ago
United States
How to extract out wanted IntegerList more elegantly from nested list?
8 years, 9 months ago
United States
How to use GenomicRanges to find overlaps by percentage covered of interval
8 years, 9 months ago
United States
Operations across Lists of GenomicRanges?
8 years, 9 months ago
United States
"rstudio initialization error: unable to connect to service" after logging in to the Master node's Rstudio Server's login page
8 years, 9 months ago
United States
How to get rid of "Update all/some/none? [a/s/n]:"
8 years, 9 months ago
United States
heatmap.2() get matrix after hierarchical clustering
8 years, 9 months ago
WEHI, Melbourne, Australia
In limma's barcode plot, why are the cutoffs for the pale red and blue bands +/-sqrt(2)?
8 years, 9 months ago
WEHI, Melbourne, Australia
Is filtering necessary to extract significant DE genes with limma ?
8 years, 9 months ago
WEHI, Melbourne, Australia
Effects of continuous variable with adjustment for gender
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