Teacher
Created An Answer With At Least 3 Up-Votes
Awarded 2251 times (see all awards). Earned by the
following contributors:
8 years, 8 months ago
Seattle, WA, United States
A: XStringSet operations discard names - how to address?
8 years, 8 months ago
The city by the bay
A: Differential expression analysis: comparison of DESeq2 and edgeR robust results
8 years, 8 months ago
WEHI, Melbourne, Australia
A: microarray data analsis with limma?
8 years, 8 months ago
The city by the bay
A: Extremely Big Number of Differences from Multi-level Design in RNA-seq Analysis
8 years, 8 months ago
Australia/Melbourne
A: Hisat2 vs featureCounts summary statistics
8 years, 8 months ago
The city by the bay
A: Detection of methylated regions from MeDIP data using csaw
8 years, 8 months ago
China/Guangzhou/Southern Medical Univer…
A: help with clusterProfiler enricher function
8 years, 8 months ago
United States
A: Get internal exons using GenomicFeatures
8 years, 8 months ago
The city by the bay
A: csaw - workflow to incorporate input/control samples?
8 years, 8 months ago
United States
A: Voom: estimation of mean-variance relationship with gene expression data normali
8 years, 8 months ago
China/Guangzhou/Southern Medical Univer…
A: making tree from NCBI taxonomy data for ggtree
8 years, 8 months ago
The city by the bay
Design and contrast question limma (additive or nested or duplicateCorrelation())??
8 years, 8 months ago
The city by the bay
EdgeR: is more than one control per batch an issue?
8 years, 8 months ago
The city by the bay
Error when calculating DE using the classical approach in edgeR
8 years, 8 months ago
The city by the bay
Differential expression analysis: comparison of DESeq2 and edgeR robust results
8 years, 8 months ago
The city by the bay
Is it valid to use only genes of interest before eBayes step in limma?
8 years, 8 months ago
The city by the bay
ROAST after edgeR glmTreat and average RPKM filter
8 years, 8 months ago
The city by the bay
Mutation effect on expression (RNA-Seq) using limma
8 years, 8 months ago
The city by the bay
How to do contrasts in CAMERA/ROMER/ROAST/etc in Limma?
8 years, 8 months ago
The city by the bay
limma Time Course Experiment with many time points
8 years, 8 months ago
The city by the bay
deseq2, edger different number of replicates and extraction kit
8 years, 8 months ago
The city by the bay
how to use edgeR analysis RNA-seq data with a obvious deviation sample
8 years, 8 months ago
The city by the bay
Possible implementation of multifactorial contrasts in limma regarding a microarray dataset
8 years, 8 months ago
The city by the bay
Rsubread featureCounts with strand information
8 years, 8 months ago
The city by the bay
duplicateCorrelation and Pearson Correlation
8 years, 8 months ago
The city by the bay
One replicate (one-color OR two-color) is enough to use Limma?
8 years, 8 months ago
The city by the bay
Differential expression analysis - additive genetic model (how to implement it)
8 years, 8 months ago
The city by the bay
Discrepancy in the output of decideTests (total not equal to sum of up/down genes)
8 years, 8 months ago
The city by the bay
csaw - workflow to incorporate input/control samples?
8 years, 8 months ago
The city by the bay
Can featurecounts count number of mapped reads rapidly in arbitrary regions?
8 years, 8 months ago
The city by the bay
design matrix - control for biological replicates
8 years, 8 months ago
The city by the bay
Combining newer/older RNAseq data, batch correcting
8 years, 8 months ago
The city by the bay
Using edgeR or DESeq2 to analyze allele-specific expression?
8 years, 8 months ago
The city by the bay
edgeR - how to convert DGELRT and other classes to .csv files
8 years, 8 months ago
The city by the bay
Design matrix and contrast for RNA knockdown experiment
8 years, 8 months ago
The city by the bay
DE for genes with very low counts using limma.
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6