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following contributors:
8 years, 5 months ago
The city by the bay
A: Mutation effect on expression (RNA-Seq) using limma
8 years, 5 months ago
WEHI, Melbourne, Australia
A: Please share me your helpful comments with edgeR analysis without replicate
8 years, 5 months ago
United States
A: GSEA preranked analysis downstream of DEseq2
8 years, 5 months ago
WEHI, Melbourne, Australia
A: Why does the filtering of lowly expressed genes for analysis with edgeR must be
8 years, 5 months ago
WEHI, Melbourne, Australia
A: Filtering lowly expressed genes in voom-limma analysis
8 years, 5 months ago
United States
A: Filtering lowly expressed genes in voom-limma analysis
8 years, 5 months ago
United States
A: Discrepanices between minifi dmp finder and lmfit
8 years, 5 months ago
United States
A: Interpretation of voom limma's intercept coefficient
8 years, 5 months ago
United States
A: edgeR subsetting DGEList by column/sample
8 years, 5 months ago
United States
A: Offline loading of BiocInstaller or depending packages and connection timeout
8 years, 5 months ago
WEHI, Melbourne, Australia
A: Counting ambiguously mapped reads per feature
8 years, 5 months ago
United States
A: Counting ambiguously mapped reads per feature
8 years, 6 months ago
Seattle, WA, United States
A: makeTxDbFromUCSC fails to download refLink table
8 years, 6 months ago
The city by the bay
A: Limma contrast for variables disease, gender and age
8 years, 6 months ago
United States
A: Analyzing microbiome data (many zero-counts) using DESeq2
8 years, 6 months ago
The city by the bay
A: Is it valid to use only genes of interest before eBayes step in limma?
8 years, 6 months ago
WEHI, Melbourne, Australia
A: limma & design matrix: for 2-color dyes and 4-comparisons?
8 years, 6 months ago
The city by the bay
A: Possible implementation of multifactorial contrasts in limma regarding a microar
8 years, 6 months ago
The city by the bay
A: LIMMA: interpreting interaction terms in an unbalanced factorial design with rep
8 years, 6 months ago
WEHI, Melbourne, Australia
A: How does edgeR compare to lme4?
8 years, 6 months ago
United States
A: Does DESeq2 or edgeR take care of random effect in the GLM
8 years, 7 months ago
Seattle, WA, United States
A: How do I merge a list of GRanges?
8 years, 7 months ago
The city by the bay
A: Can featurecounts count number of mapped reads rapidly in arbitrary regions?
8 years, 7 months ago
WEHI, Melbourne, Australia
A: GSEA-like enrichment score calculation
8 years, 7 months ago
The city by the bay
A: Bounded Regression with Limma for RRBS?
8 years, 7 months ago
United States
A: Error in assay colnames when defining DESeqDataSetFromMatrix following R update
8 years, 7 months ago
The city by the bay
A: Very low EdgeR Pvalues with very small sample size
8 years, 7 months ago
Seattle, WA, United States
A: makeTxDbFromGFF Error: subscript contains NAs or out-of-bounds indices - after p
8 years, 7 months ago
The city by the bay
A: Getting normalized read counts from region counts
8 years, 7 months ago
United States
A: How to fit a regression for a time series array experiment with limma?
8 years, 7 months ago
The city by the bay
A: how duplicates reads would affect Differential expression analysis results
8 years, 7 months ago
The city by the bay
A: design matrix - control for biological replicates
8 years, 7 months ago
The city by the bay
A: Plot normalized expression or count values for a specific gene in limma
8 years, 7 months ago
Icahn School of Medicine at Mount Sinai…
A: How to use removeBatchEffect for removing effect of multiple confounding variabl
8 years, 7 months ago
United States
A: How to do a confounding variable adjustment without using the treatment informat
8 years, 7 months ago
Seattle, WA, United States
A: How to get the intersect and get the difference of a grange object while keeping
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