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Created An Answer With At Least 3 Up-Votes
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following contributors:
8 years, 2 months ago
United States
A: bumphunter output clarification: p values achieved with b=1000: further correcti
8 years, 2 months ago
United States
A: plotPCA - how to add labels to a PCA plot
8 years, 3 months ago
WEHI, Melbourne, Australia
A: Can we use glmQLFit instead of glmFit and then glmLRT in edgeR
8 years, 3 months ago
EMBL Heidelberg
A: biomaRT GO-ID retreival showing different genes than AmiGO
8 years, 3 months ago
The city by the bay
A: Filtering read counts matrix: how to deal with duplicated gene symbols, differen
8 years, 4 months ago
WEHI, Melbourne, Australia
A: how to deal with technical replicates in limma camera
8 years, 4 months ago
EMBL Heidelberg
A: xcms and xcmsSet no longer works on my Mac
8 years, 4 months ago
WEHI, Melbourne, Australia
A: Test whether expression levels of two gene sets are significantly different
8 years, 4 months ago
The city by the bay
A: edgeR: Tagwise dispersion when using offset matrix
8 years, 4 months ago
United States
A: Mathematics behind LIMMA when we have quantitative outcome
8 years, 4 months ago
The city by the bay
A: Discrepancy in the output of decideTests (total not equal to sum of up/down gene
8 years, 4 months ago
Icahn School of Medicine at Mount Sinai…
A: edgeR RNA-seq analysis using glm
8 years, 4 months ago
New York, NY
A: ExperimentHub()[["EH359"]] has character expression values
8 years, 5 months ago
China/Guangzhou/Southern Medical Univer…
A: missing header file fftw3.h for EBImage
8 years, 5 months ago
Icahn School of Medicine at Mount Sinai…
A: DE for genes with very low counts using limma.
8 years, 5 months ago
The city by the bay
A: duplicateCorrelation and Pearson Correlation
8 years, 5 months ago
Canada
A: meta analysis of microarrays of small sample sizes
8 years, 5 months ago
WEHI, Melbourne, Australia
A: limma; Only fit list of certain genes/ filter eSet
8 years, 5 months ago
The city by the bay
A: Limma, remove batch effects and technical replicates
8 years, 5 months ago
WEHI, Melbourne, Australia
A: How featureCounts define the gene length
8 years, 5 months ago
WEHI, Melbourne, Australia
A: modeling heteroscedasticity in limma-voom for RNA-Seq data analysis
8 years, 5 months ago
United States
A: Using R package 'limma' on pre-normalized counts and the effect of non-equivalen
8 years, 6 months ago
WEHI, Melbourne, Australia
A: Explanation of an ANOVA approach of multiple coefficients in limma with topTable
8 years, 6 months ago
EMBL European Molecular Biology Laborat…
A: Processing imaging data from high throughput compound screen with EBImage
8 years, 6 months ago
Germany
A: Plotting several heatmaps onto the same grid with the ComplexHeatmap package in
8 years, 6 months ago
United States
A: How to deal with these data with DESeq2 ?? In hurry!
8 years, 6 months ago
Icahn School of Medicine at Mount Sinai…
A: [Limma] Testing continuous variable with interaction
8 years, 6 months ago
The city by the bay
A: Correlation analysis taking into account multiple correlations
8 years, 6 months ago
European Union
A: WGCNA: What is `soft thresholding`?
8 years, 6 months ago
United States
A: Find if a covariate has effect on gene expression level using edgeR and DESeq2
8 years, 6 months ago
New York, NY
ExperimentHub()[["EH359"]] has character expression values
8 years, 6 months ago
The city by the bay
A: Error when calculating DE using the classical approach in edgeR
8 years, 7 months ago
The city by the bay
A: ROAST after edgeR glmTreat and average RPKM filter
8 years, 7 months ago
The city by the bay
A: EdgeR glmLRT vs glmQL - hundreds of DE genes with glmLRT, almost none with glmQL
8 years, 7 months ago
The city by the bay
A: Disagreement between TMM (edgeR) and RLE (DESeq) normalisation for single-cell d
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