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following contributors:
8 years, 2 months ago
United States
DESeq2: multiple conditions design -- How to select subset comparisons from the DESeq object for PCA, ...
8 years, 2 months ago
Cambridge, UK
A: DiffBind: error with dba(sampleSheet="samples.csv")
8 years, 2 months ago
United States
DESeq2: multiple conditions design -- How to select subset comparisons from the DESeq object for PCA, ...
8 years, 2 months ago
WEHI, Melbourne, Australia
A: illumina ht-12 v4 expression beadchip
8 years, 2 months ago
Icahn School of Medicine at Mount Sinai…
What's the relationship between "design" and "contrasts"?
8 years, 2 months ago
United States
DESeq2: multiple conditions design -- How to select subset comparisons from the DESeq object for PCA, ...
8 years, 2 months ago
The city by the bay
A: apply edgeR TMM normalization without converting data format into 'DGEList'
8 years, 2 months ago
WEHI, Melbourne, Australia
A: correction for batch effects and paired-design of RNA-seq samples
8 years, 2 months ago
WEHI, Melbourne, Australia
limma; Only fit list of certain genes/ filter eSet
8 years, 2 months ago
United States
Why do I get different GO term sizes using the same gene universe for 2 analyses with GOstats?
8 years, 2 months ago
United States
A: Why do I get different GO term sizes using the same gene universe for 2 analyses
8 years, 2 months ago
European Union
A: Where can I use the VSN source code in C++?
8 years, 2 months ago
United States
DESeq2: multiple conditions design -- How to select subset comparisons from the DESeq object for PCA, ...
8 years, 2 months ago
United States
A: DESeq2 cooksCutoff ON/OFF: pairwise contrasts for many groups, some with only 2
8 years, 2 months ago
Switzerland
Create custom IdeogramTrack (Gviz)
8 years, 2 months ago
United States
A: Alternate expression of splice isoforms on Affy Clariom D assay
8 years, 2 months ago
The city by the bay
A: How to deal with low-depth RNA-Seq within DESeq2 or edgeR
8 years, 2 months ago
WEHI, Melbourne, Australia
A: about model.matrix in limma or edgeR
8 years, 2 months ago
WEHI, Melbourne, Australia
limma; Only fit list of certain genes/ filter eSet
8 years, 2 months ago
The city by the bay
Discrepancy in the output of decideTests (total not equal to sum of up/down genes)
8 years, 2 months ago
The city by the bay
A: Which is the best design matrix to compare a timecourse between two conditions?
8 years, 2 months ago
The city by the bay
Discrepancy in the output of decideTests (total not equal to sum of up/down genes)
8 years, 2 months ago
The city by the bay
Discrepancy in the output of decideTests (total not equal to sum of up/down genes)
8 years, 2 months ago
The city by the bay
Discrepancy in the output of decideTests (total not equal to sum of up/down genes)
8 years, 3 months ago
University of Oxford
Is it common to get all 0 values when running the randomForest step in GOexpress?
8 years, 3 months ago
WEHI, Melbourne, Australia
A: One replicate (one-color OR two-color) is enough to use Limma?
8 years, 3 months ago
The city by the bay
A: One replicate (one-color OR two-color) is enough to use Limma?
8 years, 3 months ago
Icahn School of Medicine at Mount Sinai…
A: What's the relationship between "design" and "contrasts"?
8 years, 3 months ago
The city by the bay
A: edgeR quasi-likelihood dispersion estimates
8 years, 3 months ago
European Union
A: Reactome pathways in ReactomeDB/graphite
8 years, 3 months ago
United States
A: Annotating DEseq output using AnnotationDbi mapIds and most results say NA
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