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following contributors:
7 years, 10 months ago
WEHI, Melbourne, Australia
limma; Only fit list of certain genes/ filter eSet
7 years, 10 months ago
WEHI, Melbourne, Australia
A: Differential binding of ATAC-seq data with no replicates
7 years, 10 months ago
Icahn School of Medicine at Mount Sinai…
What's the relationship between "design" and "contrasts"?
7 years, 10 months ago
Switzerland
Create custom IdeogramTrack (Gviz)
7 years, 10 months ago
WEHI, Melbourne, Australia
seeking a paper or journal review about repeated multiple testing for Biological ChIP-seq replicates?
7 years, 10 months ago
WEHI, Melbourne, Australia
limma; Only fit list of certain genes/ filter eSet
7 years, 10 months ago
USA
Are published RNA seq data analyses often wrong in calculating p-values and FDR?
7 years, 10 months ago
The city by the bay
A: Limma: Contrasts with interaction term
7 years, 10 months ago
United States
A: standard error value (lfcSE) returned by DeSeq2
7 years, 10 months ago
United Kingdom / London / Francis Crick…
extracting the genes associated with the clusters
7 years, 10 months ago
United States
A: txImport: a gene seems missing from the sample data
7 years, 10 months ago
United States
DESeq2: multiple conditions design -- How to select subset comparisons from the DESeq object for PCA, ...
7 years, 10 months ago
The city by the bay
A: Dealing with (blood) contamination in RNA-seq data
7 years, 10 months ago
United States
DESeq2: multiple conditions design -- How to select subset comparisons from the DESeq object for PCA, ...
7 years, 10 months ago
University of Oxford
Is it common to get all 0 values when running the randomForest step in GOexpress?
7 years, 10 months ago
University of Oxford
A: heatmap of genes based on enriched GO categories
7 years, 10 months ago
WEHI, Melbourne, Australia
limma; Only fit list of certain genes/ filter eSet
7 years, 10 months ago
The city by the bay
A: Timecourse Differential expression with multiple factors
7 years, 10 months ago
EMBL European Molecular Biology Laborat…
package specifically dedicated to a manuscript
7 years, 10 months ago
United States
DESeq2: multiple conditions design -- How to select subset comparisons from the DESeq object for PCA, ...
7 years, 10 months ago
Icahn School of Medicine at Mount Sinai…
What's the relationship between "design" and "contrasts"?
7 years, 10 months ago
EMBL Heidelberg
A: How are duplicates determined with readGAlignments/scanBam?
7 years, 10 months ago
United States
A: ABOUT TRANSFORMATION OF RNA-SEQ DATA FOR GLMNET COX SURVIVAL ANALYSIS
7 years, 10 months ago
United States
A: How to find all available packages on BioConductor
7 years, 10 months ago
The city by the bay
A: Using the ERCC spike as a normalization factor for a custom algorithm
7 years, 10 months ago
EMBL European Molecular Biology Laborat…
package specifically dedicated to a manuscript
7 years, 10 months ago
The city by the bay
A: (batch) corrections of RNA-seq data: integrating LIMMA and SVA
7 years, 10 months ago
Seattle, WA, United States
A: how to extract part of the DNA sequences from a DNAstringset
7 years, 10 months ago
United States
DESeq2: multiple conditions design -- How to select subset comparisons from the DESeq object for PCA, ...
7 years, 10 months ago
Cambridge, UK
A: DiffBind: error with dba(sampleSheet="samples.csv")
7 years, 10 months ago
United States
DESeq2: multiple conditions design -- How to select subset comparisons from the DESeq object for PCA, ...
7 years, 10 months ago
WEHI, Melbourne, Australia
A: illumina ht-12 v4 expression beadchip
7 years, 10 months ago
Icahn School of Medicine at Mount Sinai…
What's the relationship between "design" and "contrasts"?
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