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following contributors:
7 years, 7 months ago
Icahn School of Medicine at Mount Sinai…
A: limma: same data in different formats produces different DEG-analysis results
7 years, 7 months ago
Austria
R code for cn.mops -- if a chromosome does not have CNV ?
7 years, 7 months ago
Heidelberg, Germany
Issue with pandoc-citeproc when rendering the f1000 article Rmd file from BiocWorkFlowTools
7 years, 7 months ago
United States
A: Finding orthologous human/mouse ENSEMBL IDs
7 years, 7 months ago
Wageningen University, Wageningen, the …
A: Taking surrogate variable into account before running PCA
7 years, 7 months ago
Novartis Institutes for BioMedical Rese…
Translating model formula from DESeq to DEXSeq
7 years, 7 months ago
Novartis Institutes for BioMedical Rese…
DEXSeq with mutliple experimental conditions - definig contrasts
7 years, 7 months ago
Italy
A: Is it possible to get Ensembl gene descriptions with ensembldb?
7 years, 7 months ago
San Francisco, CA, USA
Ballgown vs (voom,edgeR,DESeq,limma)
7 years, 7 months ago
United Kingdom
[ReportingTools] HTMLReport of DESeq2 results using Ensembl Gene Ids
7 years, 7 months ago
Heidelberg
Possible to incorporate the sign or direction of an effect in the IHW covariate?
7 years, 7 months ago
United States
Error in GRanges: could not find symbol "recursive" in environment of the generic function
7 years, 7 months ago
The city by the bay
A: differential expression analysis of htseq data with edgeR/voom
7 years, 7 months ago
Mitchell Cancer Institute, Mobile AL, U…
Microarray analysis of .idat files to identify degs
7 years, 7 months ago
Australia
voomWithQualityWeights: question on min. number of replicates per group + design to use
7 years, 7 months ago
Icahn School of Medicine at Mount Sinai…
What's the relationship between "design" and "contrasts"?
7 years, 7 months ago
United States
Limma: Paired samples, multiple groups: problems understanding contrasts and model.matrix
7 years, 7 months ago
WEHI, Melbourne, Australia
A: Samples without pair in paired design experiment
7 years, 7 months ago
United States
A: Problem with locfit after update bioconductor to Bioconductor version 3.5
7 years, 7 months ago
United States
Processing several GSM from GEO database using Barcode and fRMA
7 years, 7 months ago
United States
trying to annotate overlaps with external file information
7 years, 7 months ago
United States
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
7 years, 7 months ago
United States
A: What is the proper way to modify mcols of a GRanges inside a GRangesList?
7 years, 8 months ago
Barcelona/Universitat Pompeu Fabra
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
7 years, 8 months ago
Barcelona/Universitat Pompeu Fabra
Are published RNA seq data analyses often wrong in calculating p-values and FDR?
7 years, 8 months ago
United States
Is the VST implemented in DESeq useful on time-series cell differentiation datasets?
7 years, 8 months ago
United States
Limma: Paired samples, multiple groups: problems understanding contrasts and model.matrix
7 years, 8 months ago
United States
Is the VST implemented in DESeq useful on time-series cell differentiation datasets?
7 years, 8 months ago
United States
Is the VST implemented in DESeq useful on time-series cell differentiation datasets?
7 years, 8 months ago
United States
Is the VST implemented in DESeq useful on time-series cell differentiation datasets?
7 years, 8 months ago
The city by the bay
A: Experiment design contrasts any time edgeR
7 years, 8 months ago
United States
Filtering absent transcripts from Gene ST array
7 years, 8 months ago
University of Padova
A: Fundamental questions about DESeq2 and RUVs in targeted gene set of 500
7 years, 8 months ago
United States
trying to annotate overlaps with external file information
7 years, 8 months ago
Zentrum für Molekularbiologie, Universi…
P values from Deseq Analysis
7 years, 8 months ago
The city by the bay
A: Using duplicateCorrelation to handle replicate samples
7 years, 8 months ago
United States
trying to annotate overlaps with external file information
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