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Created An Answer With At Least 3 Up-Votes
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following contributors:
7 years, 10 months ago
United States
What is the proper way to modify mcols of a GRanges inside a GRangesList?
7 years, 10 months ago
United States
unlist a exons GRangeslist object and add a gene name column
7 years, 10 months ago
United States
when to apply quantile normalization with voom in limma/voom framework with RNA-seq data?
7 years, 10 months ago
United States
Best DEG tool for datasets with FPKM counts?
7 years, 10 months ago
United States
Add new columns to DESeqResults from text file by matching rownames.
7 years, 10 months ago
United States
Is the VST implemented in DESeq useful on time-series cell differentiation datasets?
7 years, 10 months ago
United States
Convert Normalized RNA-Seq counts to TPM after Batch Correction
7 years, 10 months ago
United States
Analyzing RNA-Seq data without replicates using DESeq
7 years, 10 months ago
United States
How to get DESeq2 sizefactors from data imported using tximport
7 years, 10 months ago
United States
DESeq2 biais when genes are missing from the annotation?
7 years, 10 months ago
United States
DESeq2 batch effect with and without interaction model
7 years, 10 months ago
United States
DESeq2: multiple conditions design -- How to select subset comparisons from the DESeq object for PCA, ...
7 years, 10 months ago
United States
Confused in the usage of formula in DESeq or DESeq2
7 years, 10 months ago
United States
DESeq2: Applying different pre-filtering for DE and EDA/Visualization of RNASeq data
7 years, 10 months ago
United States
GC/length bias correction in gene expression quantification - Is CQN necessary if using Salmon --GCBias option?
7 years, 10 months ago
United States
How does DESeq2 handle zero counts in one condition?
7 years, 10 months ago
United States
What to use: PCA or tSNE dimension reduction in DESeq2 analysis?
7 years, 10 months ago
United States
Normalize to additional variable (brain weight) in DESeq2
7 years, 10 months ago
United States
DESeq2 batch effect modeling and matrix not full rank
7 years, 10 months ago
United States
Are published RNA seq data analyses often wrong in calculating p-values and FDR?
7 years, 10 months ago
United States
DESeq2: add annotations (from data frame) to DESeqDataSet
7 years, 10 months ago
Austria
R code for cn.mops -- if a chromosome does not have CNV ?
7 years, 10 months ago
United States
What are out-of-bound ranges? Is it necessary to get rid of them?
7 years, 10 months ago
Barcelona/Universitat Pompeu Fabra
Are published RNA seq data analyses often wrong in calculating p-values and FDR?
7 years, 10 months ago
Barcelona/Universitat Pompeu Fabra
Best method/package for Gene Set Enrichment Analysis in microarrays?
7 years, 10 months ago
United States
A: Mismatched ArrayExpress microarray annotation package
7 years, 10 months ago
Italy
Is it possible to annotated mitochondrial genes with ENSEMBL ids and Homo.sapiens/Mus.musculus?
7 years, 10 months ago
Italy
How to map all Ensembl IDs to Gene Symbols- Problem with AnootationDbi
7 years, 10 months ago
CUNY Graduate School of Public Health a…
Integrated genomic analysis - mRNA, proteomics, flow, miRNA-seq
7 years, 10 months ago
CUNY Graduate School of Public Health a…
Reproducibility of MultiDataSet Comparison
7 years, 10 months ago
Icahn School of Medicine at Mount Sinai…
What's the relationship between "design" and "contrasts"?
7 years, 10 months ago
Icahn School of Medicine at Mount Sinai…
RNA-seq Normalisation - normalise all samples in experiment or only the ones used in the comparison?
7 years, 10 months ago
Icahn School of Medicine at Mount Sinai…
How does the function model.matrix (to define experimental design) really works ?
7 years, 10 months ago
Icahn School of Medicine at Mount Sinai…
edger glmQLFit mix glmLRT
7 years, 10 months ago
Icahn School of Medicine at Mount Sinai…
ribosome profiling analysis with different dispersions
7 years, 10 months ago
University of Padova
RUVseq PCA on raw data, whereas DESeq suggests stabilization
7 years, 10 months ago
EMBL Heidelberg
biomaRT GO-ID retreival showing different genes than AmiGO
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