Teacher
Created An Answer With At Least 3 Up-Votes
Awarded 2251 times (see all awards). Earned by the
following contributors:
7 years, 6 months ago
WEHI, Melbourne, Australia
Why different filtering criteria using CPM to filter the RNA-seq count data in edgeR have so much influence on the number of DE genes?
7 years, 6 months ago
WEHI, Melbourne, Australia
Subsetting ELists and Applying sva to Iterative Differential Gene Expression Tests
7 years, 6 months ago
WEHI, Melbourne, Australia
Representative gene expression value in one condition with several replicates
7 years, 6 months ago
WEHI, Melbourne, Australia
using duplicateCorrelation with limma+voom for RNA-seq data
7 years, 6 months ago
WEHI, Melbourne, Australia
Do the outputs of Limma's competitive gene set methods (camera, romer) require a mutliple testing correction?
7 years, 6 months ago
WEHI, Melbourne, Australia
limma; Only fit list of certain genes/ filter eSet
7 years, 6 months ago
WEHI, Melbourne, Australia
goana limma- extract list of DE genes and genes in the enriched GO terms?
7 years, 6 months ago
WEHI, Melbourne, Australia
Differences between limma voom E values and edgeR cpm values?
7 years, 6 months ago
WEHI, Melbourne, Australia
limma-trend with random effects and/or array weights
7 years, 6 months ago
WEHI, Melbourne, Australia
Examples of concise description of NGS and bioinformatics (with DESEq2 or edgeR) in M&M of biological paper
7 years, 6 months ago
WEHI, Melbourne, Australia
seeking a paper or journal review about repeated multiple testing for Biological ChIP-seq replicates?
7 years, 6 months ago
WEHI, Melbourne, Australia
how to use "non-standard" species for KEGG / GO analysis in limma?
7 years, 6 months ago
WEHI, Melbourne, Australia
Please share me your helpful comments with edgeR analysis without replicate
7 years, 6 months ago
WEHI, Melbourne, Australia
Different logFC (log2foldchange) values for genes from limma-voom and other tools (edgeR and DESeq2)
7 years, 6 months ago
WEHI, Melbourne, Australia
RNA-Seq, generate batch-free count matrix
7 years, 6 months ago
WEHI, Melbourne, Australia
modeling heteroscedasticity in limma-voom for RNA-Seq data analysis
7 years, 6 months ago
WEHI, Melbourne, Australia
Differential expression of FPKM from RNA-seq data using limma and voom()
7 years, 6 months ago
WEHI, Melbourne, Australia
Trouble identifying differentially expressed genes on Affymetrix Human Gene 2.0.ST using R with oligo and limma package
7 years, 6 months ago
WEHI, Melbourne, Australia
Test whether expression levels of two gene sets are significantly different
7 years, 6 months ago
WEHI, Melbourne, Australia
Fit a multinomial to RNA-seq count data
7 years, 6 months ago
WEHI, Melbourne, Australia
Differences between edgeR's and limma+voom's implementation of camera/roast/romer
7 years, 6 months ago
European Union
Does anyone need to install an R package which is used by another package as importFrom(.,.)?
7 years, 6 months ago
China/Guangzhou/Southern Medical Univer…
How to do simple Fisher' exact test for overlapped genomic interval in R?
7 years, 6 months ago
Australia
how to extract read alignments from reads aligning in mulitple locations
7 years, 6 months ago
Seattle, WA, United States
Extracting Coordinates of startcodon from Grangeslist
7 years, 6 months ago
Seattle, WA, United States
extract subsequence(s) from DNAStringSet with getSeq
7 years, 6 months ago
Seattle, WA, United States
about setdiff() and meta-information in GRanges
7 years, 6 months ago
Seattle, WA, United States
How to create tx2gene data.frame when there's no TxDb object for the organism you are working with.
7 years, 6 months ago
Seattle, WA, United States
overlapsAny for elements in GRangesList
7 years, 6 months ago
Seattle, WA, United States
Error when running "locateVariants" function in "VariantAnnotation" package
7 years, 6 months ago
Australia/Melbourne
Explainnation of featureCounts in-built annotation?
7 years, 6 months ago
Australia/Melbourne
nthreads option does NOT work in rsubread featureCounts
7 years, 6 months ago
Australia/Melbourne
Reads mistakenly being assigned to Unassigned_NoFeatures category when using featureCounts
7 years, 6 months ago
United States
trying to annotate overlaps with external file information
7 years, 6 months ago
United States
annotate GRanges with upstream or downstream nearest gene
7 years, 6 months ago
United States
What is the proper way to modify mcols of a GRanges inside a GRangesList?
7 years, 6 months ago
United States
unlist a exons GRangeslist object and add a gene name column
7 years, 6 months ago
United States
when to apply quantile normalization with voom in limma/voom framework with RNA-seq data?
7 years, 6 months ago
United States
Best DEG tool for datasets with FPKM counts?
7 years, 6 months ago
United States
Add new columns to DESeqResults from text file by matching rownames.
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6