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following contributors:
7 years, 6 months ago
The city by the bay
How to use limma to do regularization for Ballgown
7 years, 6 months ago
The city by the bay
edgeR long vectors support when normalizing abundance matrix
7 years, 6 months ago
The city by the bay
Advice regarding RNAseq data with no replicates, best approach to accomplish fold-change
7 years, 6 months ago
The city by the bay
Common dispersion value using edgeR for DEGs analysis
7 years, 6 months ago
The city by the bay
(batch) corrections of RNA-seq data: integrating LIMMA and SVA
7 years, 6 months ago
The city by the bay
edgeR: Tagwise dispersion when using offset matrix
7 years, 6 months ago
The city by the bay
differential expression analysis of htseq data with edgeR/voom
7 years, 6 months ago
The city by the bay
goana limma- extract list of DE genes and genes in the enriched GO terms?
7 years, 6 months ago
The city by the bay
Experiment design contrasts any time edgeR
7 years, 6 months ago
The city by the bay
Discrepancy in the output of decideTests (total not equal to sum of up/down genes)
7 years, 6 months ago
The city by the bay
csaw: how does unequal sample size affect filtering filterWindows step
7 years, 6 months ago
The city by the bay
Finding genes respond differently to treatment between many genotype comparison
7 years, 6 months ago
The city by the bay
Using duplicateCorrelation to handle replicate samples
7 years, 6 months ago
The city by the bay
csaw - workflow to incorporate input/control samples?
7 years, 6 months ago
The city by the bay
Help with design matrix for two cell types, multiple treatments
7 years, 6 months ago
The city by the bay
Sparse matrices in Bioconductor objects for single-cell analyses
7 years, 6 months ago
The city by the bay
Can featurecounts count number of mapped reads rapidly in arbitrary regions?
7 years, 6 months ago
The city by the bay
design matrix - control for biological replicates
7 years, 6 months ago
The city by the bay
Combining newer/older RNAseq data, batch correcting
7 years, 6 months ago
The city by the bay
Using edgeR or DESeq2 to analyze allele-specific expression?
7 years, 6 months ago
The city by the bay
edgeR - how to convert DGELRT and other classes to .csv files
7 years, 6 months ago
The city by the bay
Design matrix and contrast for RNA knockdown experiment
7 years, 6 months ago
The city by the bay
LogFC: how do you determine the cutoff for differentially expressed genes?
7 years, 6 months ago
The city by the bay
DE for genes with very low counts using limma.
7 years, 6 months ago
The city by the bay
Dealing with (blood) contamination in RNA-seq data
7 years, 6 months ago
United States
Q score filter: 90% of the q scores from a QualityScaledDNAStringSet are above 30.
7 years, 6 months ago
United States
error with many packages: "Error : .onLoad failed in loadNamespace() for 'org.Hs.eg.db'"
7 years, 6 months ago
United States
Error in GRanges: could not find symbol "recursive" in environment of the generic function
7 years, 6 months ago
United States
How to convert a GRangesList object into a GRanges object?
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