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following contributors:
7 years, 6 months ago
United States
A: What to use: PCA or tSNE dimension reduction in DESeq2 analysis?
7 years, 6 months ago
United States
Error in .checkKeys(value, Lkeys(x), x@ifnotfound) : value for "GO:0000059" not found
7 years, 6 months ago
United States
package ‘edgeR’ is not available (for R version 3.1.2)
7 years, 6 months ago
United States
Best way to convert uniprot accessions to entrez gene identifiers in R
7 years, 6 months ago
United States
Limma: Paired samples, multiple groups: problems understanding contrasts and model.matrix
7 years, 6 months ago
United States
Filtering absent transcripts from Gene ST array
7 years, 6 months ago
United States
Can edgeR TMM normalization be used for other count data?
7 years, 6 months ago
United States
Agilent microarray chip normalization/background correction
7 years, 6 months ago
United States
Why do I get different GO term sizes using the same gene universe for 2 analyses with GOstats?
7 years, 6 months ago
United States
how to extract Granges not overlapping with other ganges?
7 years, 6 months ago
United States
Strong upwards correlation between log fold change and average log expression in MD plot of Limma
7 years, 6 months ago
United States
[FIXED] Error in Gviz (actually, rtracklayer) | IdeogramTrack
7 years, 6 months ago
United States
including information indicating upregulation/downregulation of genes in goana()
7 years, 6 months ago
United States
Voom: estimation of mean-variance relationship with gene expression data normalized with methods other than cpm
7 years, 6 months ago
United States
Unable to install a Bioconductor package to local directory
7 years, 6 months ago
United States
how to transform a list of IRanges into a RangesList instance
7 years, 6 months ago
United States
featureCounts in-built annotation doesn't match BioMart annotation?
7 years, 6 months ago
United States
Identify up and down regulated genes in affymetrix data
7 years, 6 months ago
United States
Interpretation of voom limma's intercept coefficient
7 years, 6 months ago
United States
Finding gene lengths of mm10 to calculate rpkm from count matrix of rna-seq dataset
7 years, 6 months ago
United States
How to deal with Affymetrix GeneChip probeids that map to multiple genes
7 years, 6 months ago
EMBL Heidelberg
Is there a way to tell biocLite() to install a Bioconductor package only if it is not installed already?
7 years, 6 months ago
EMBL Heidelberg
biomaRT GO-ID retreival showing different genes than AmiGO
7 years, 6 months ago
EMBL Heidelberg
Please use the function 'listAttributes' to get valid attribute names
7 years, 6 months ago
EMBL Heidelberg
Scan error using biomart with version option
7 years, 6 months ago
EMBL Heidelberg
biomaRt: drerio_gene_ensembl dataset missing
7 years, 6 months ago
European Union
Does anyone need to install an R package which is used by another package as importFrom(.,.)?
7 years, 6 months ago
United States
GenomicAlignments is too slow with summarizeOverlaps
7 years, 6 months ago
The city by the bay
Building contrasts for combined treatment groups to compare to a control
7 years, 6 months ago
The city by the bay
Representative gene expression value in one condition with several replicates
7 years, 6 months ago
The city by the bay
edgeR normalisation factors different between experimental groups
7 years, 6 months ago
The city by the bay
Is Limma's removeBatchEffect() and log2() commutative?
7 years, 6 months ago
The city by the bay
Saving output from glmTreat to a csv file?
7 years, 6 months ago
The city by the bay
Paired Test - Design Matrix and Contrast Matrix Voom and Limma
7 years, 6 months ago
The city by the bay
Difficulty in finding DEG using TCGA data from FireBrowse
7 years, 6 months ago
The city by the bay
edgeR: Should there be a normalization step for CRISPR screens? How to deal with bottlenecked screens?
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