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Created An Answer With At Least 3 Up-Votes
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following contributors:
7 years, 3 months ago
The city by the bay
A: edgeR long vectors support when normalizing abundance matrix
7 years, 3 months ago
United States
A: DESeq2 time series contrasts between timepoints
7 years, 3 months ago
The city by the bay
A: Differential gene expression for multi-factorial experiment using edgeR
7 years, 3 months ago
WEHI, Melbourne, Australia
A: Why limma, edgeR, and DESeq did not implement fold change moderation first?
7 years, 3 months ago
Seattle, WA, United States
C: How to create tx2gene data.frame when there's no TxDb object for the organism yo
7 years, 3 months ago
Seattle, WA, United States
A: Split Genome into 2kb bins GenomicRanges
7 years, 3 months ago
WEHI, Melbourne, Australia
A: limma-trend with random effects and/or array weights
7 years, 3 months ago
Cambridge, UK
A: How to select summit size for histone ChiP-Seq in Diffbind
7 years, 3 months ago
France
A: Data arrangement for PLSDA using the ropls R-package
7 years, 4 months ago
United States
A: Retrieving all genes related a go term
7 years, 4 months ago
WEHI, Melbourne, Australia
A: remove microarray batch effects using Limma
7 years, 4 months ago
Icahn School of Medicine at Mount Sinai…
A: removeBatchEffect options: design and covariates
7 years, 4 months ago
United States
A: Interaction term - Model matrix not full rank
7 years, 4 months ago
CUNY Graduate School of Public Health a…
A: Reproducibility of MultiDataSet Comparison
7 years, 4 months ago
CUNY Graduate School of Public Health a…
A: Reproducibility of MultiDataSet Comparison
7 years, 4 months ago
United States
A: Biclustering Normalizing by Row in Heatmap of DESeq2
7 years, 4 months ago
University of Connecticut
A: SNP location annotation problem in "VariantAnnotation" package
7 years, 4 months ago
WEHI, Melbourne, Australia
A: Examples of concise description of NGS and bioinformatics (with DESEq2 or edgeR)
7 years, 4 months ago
WEHI, Melbourne, Australia
A: read counts for each gene for edgeR
7 years, 4 months ago
Australia/Melbourne
A: nthreads option does NOT work in rsubread featureCounts
7 years, 4 months ago
The city by the bay
A: edgeR design between and within subjects
7 years, 5 months ago
WEHI, Melbourne, Australia
A: Filtering step in Differential analysis with RSEM values
7 years, 5 months ago
Canada
A: conumee error: query intensities not given for all probes.
7 years, 5 months ago
United States
A: DESeq2 interaction term in two-factor design, which contrasts?
7 years, 5 months ago
United Kingdom
A: Identify up and down regulated genes in affymetrix data
7 years, 5 months ago
United States
A: Identify up and down regulated genes in affymetrix data
7 years, 5 months ago
The city by the bay
A: Designing a model matrix and further process?
7 years, 5 months ago
United Kingdom
Identify up and down regulated genes in affymetrix data
7 years, 6 months ago
The city by the bay
A: Cell type specific cell markers for Seurat based analysis.
7 years, 6 months ago
United States
A: How to set custom Brainarray annotation for Biobase ExpressionSet object?
7 years, 6 months ago
WEHI, Melbourne, Australia
A: Batch effect between paired and single ended reads
7 years, 6 months ago
The city by the bay
A: Accounting for both categorical and numerical possible confounding variables in
7 years, 6 months ago
United States
A: tximport error: all(names(aveLengthSampGene) == rownames(lengthMat)) is not TRUE
7 years, 6 months ago
boston
A: conumee error: query intensities not given for all probes.
7 years, 6 months ago
boston
conumee error: query intensities not given for all probes.
7 years, 6 months ago
United States
A: Error message that there is no package called Biobase
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