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Created An Answer With At Least 3 Up-Votes
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following contributors:
6 years ago
United States
novice: building gene co-expression network using RNA-Seq data
6 years ago
Cambridge, UK
Differential analysis of multiple samples with different time points
6 years ago
WEHI, Melbourne, Australia
A: differential expression analysis of htseq data with edgeR/voom
6 years ago
Seattle, WA, United States
Calling coverage on GRanges object yields small negative values
6 years ago
United States
DE genes comparison of different treatments from microarray and RNAseq data
6 years ago
Swedish Museum of Natural History
The query to the BioMart webservice returned an invalid result: the number of columns in the result table does not equal the number of attributes in the query
6 years ago
Icahn School of Medicine at Mount Sinai…
What's the relationship between "design" and "contrasts"?
6 years ago
Icahn School of Medicine at Mount Sinai…
Voom transformation from counts and normalization to negative values
6 years ago
Icahn School of Medicine at Mount Sinai…
[Limma] Testing continuous variable with interaction
6 years ago
Icahn School of Medicine at Mount Sinai…
Finding DE genes from RNA-seq data
6 years ago
Icahn School of Medicine at Mount Sinai…
Correct assumptions of using limma moderated t-test
6 years ago
WEHI, Melbourne, Australia
A: Odd P-value distribution in edgeR on RRBS data
6 years ago
United States
A: How to quantify or decide whether a covariate should be included in the linear m
6 years ago
The city by the bay
A: scran: Are the log counts expression comparable among different genes within a s
6 years ago
The city by the bay
A: RNAseq analysis: what comes first, filtering or normalization
6 years, 1 month ago
Barcelona/Universitat Pompeu Fabra
Differential expression on GSVA scores using LIMMA
6 years, 1 month ago
San Diego
Appropriate experimental design for differential expresion
6 years, 1 month ago
EMBL Heidelberg
getBM error: The query to the BioMart webservice returned an invalid result
6 years, 1 month ago
The city by the bay
EdgeR - blocking for multiple factors at once - Errors
6 years, 1 month ago
The city by the bay
applying voom + limma to a block factor design in RNA-seq experiment
6 years, 1 month ago
The city by the bay
Representative gene expression value in one condition with several replicates
6 years, 1 month ago
The city by the bay
Building contrasts for combined treatment groups to compare to a control
6 years, 1 month ago
WEHI, Melbourne, Australia
How barcode-plot enrichment is calculated?
6 years, 1 month ago
WEHI, Melbourne, Australia
ANOVA-like test via treat() in limma
6 years, 1 month ago
United States
DE genes comparison of different treatments from microarray and RNAseq data
6 years, 1 month ago
United States
How to set up appropriate analysis using sample type and condition for DESeq2
6 years, 1 month ago
United States
A: Different annotation obtained from hgu133a2.db and affymetrix annotation release
6 years, 1 month ago
United States
novice: building gene co-expression network using RNA-Seq data
6 years, 2 months ago
United States
A: maintainer option for bioconductor packages
6 years, 2 months ago
United States
A: Method to get normalized counts in edgeR without cpm
6 years, 2 months ago
United States/Austin Area
A: Pigengene : BN network using consensus module
6 years, 2 months ago
Ghent University, Belgium
Correct use of Nested/Stage-wise testing with limma/stageR for 3-group design.
6 years, 2 months ago
United States
DE genes comparison of different treatments from microarray and RNAseq data
6 years, 2 months ago
United States
Error in .checkKeys(value, Lkeys(x), x@ifnotfound) : value for "GO:0000059" not found
6 years, 2 months ago
United States
How to set up appropriate analysis using sample type and condition for DESeq2
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