Teacher
Created An Answer With At Least 3 Up-Votes
Awarded 2251 times (see all awards). Earned by the
following contributors:
5 years, 12 months ago
The city by the bay
goana limma- extract list of DE genes and genes in the enriched GO terms?
5 years, 12 months ago
The city by the bay
Correct use of tximport in combination with edgeR cpm()
5 years, 12 months ago
The city by the bay
Differential gene expression for multi-factorial experiment using edgeR
5 years, 12 months ago
The city by the bay
Filtering read counts matrix: how to deal with duplicated gene symbols, different ENSEMBL ids
5 years, 12 months ago
The city by the bay
Re-numbering blocking IDs on paired samples with duplicateCorrelation or design covariate
5 years, 12 months ago
The city by the bay
Gene expression associated with continuous (quantitative) traits (Limma/edgeR/correlation)
5 years, 12 months ago
The city by the bay
scran: Are the log counts expression comparable among different genes within a sample/cell ?
5 years, 12 months ago
The city by the bay
Saving output from glmTreat to a csv file?
5 years, 12 months ago
The city by the bay
How to identify real cells in 10X RNA-seq ?
5 years, 12 months ago
The city by the bay
limma-voom duplicateCorrelation once or twice, difference?
5 years, 12 months ago
The city by the bay
Limma trend test with pre/post design and technical replicates
5 years, 12 months ago
The city by the bay
Building contrasts for combined treatment groups to compare to a control
5 years, 12 months ago
The city by the bay
Complex multifactorial design with random effects in Limma/voom
5 years, 12 months ago
The city by the bay
scRNA-seq : Classification of cell cycle phase
5 years, 12 months ago
The city by the bay
differential expression analysis of htseq data with edgeR/voom
5 years, 12 months ago
The city by the bay
edgeR normalisation factors different between experimental groups
5 years, 12 months ago
The city by the bay
Representative gene expression value in one condition with several replicates
5 years, 12 months ago
United States
Where to download expected counts instead of normalized RSEM for TCGA LUAD?
5 years, 12 months ago
The city by the bay
A: limma for getting DEGs from my own input matrix
5 years, 12 months ago
United States
How to add my own Entrez Gene IDs rather than using the ones from a default package?
5 years, 12 months ago
United States
DE genes comparison of different treatments from microarray and RNAseq data
5 years, 12 months ago
United States
Effect of lfcThreshold on p-value in DESeq2
5 years, 12 months ago
United States
How to export enrichGO results for future visualization with barplot, dotplot, emapplot...
5 years, 12 months ago
United States
Conduct likelihood ratio tests for a variable that isn't explicitly defined by matrix.model
5 years, 12 months ago
United States
EdgeR blocking and "All combinations of multiple factors"
5 years, 12 months ago
United States
HTA 2.0 Differential expression analysis - design question
5 years, 12 months ago
United States
Error in .checkKeys(value, Lkeys(x), x@ifnotfound) : value for "GO:0000059" not found
5 years, 12 months ago
United States
Different annotation obtained from hgu133a2.db and affymetrix annotation release
5 years, 12 months ago
Switzerland
Gvis: Adding colour and transparency to overlaid alignment tracks
6 years ago
United States
How to set up appropriate analysis using sample type and condition for DESeq2
6 years ago
United States
DE genes comparison of different treatments from microarray and RNAseq data
6 years ago
Seattle, WA, United States
Calling coverage on GRanges object yields small negative values
6 years ago
Seattle, WA, United States
Extracting Coordinates of startcodon from Grangeslist
6 years ago
United States
How to set up appropriate analysis using sample type and condition for DESeq2
6 years ago
United States
How to use GenomicRanges to find overlaps by percentage covered of interval
6 years ago
United States
trying to annotate overlaps with external file information
6 years ago
United States
novice: building gene co-expression network using RNA-Seq data
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6