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Created An Answer With At Least 3 Up-Votes
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following contributors:
6 years, 2 months ago
United States
Q score filter: 90% of the q scores from a QualityScaledDNAStringSet are above 30.
6 years, 2 months ago
United States
error with many packages: "Error : .onLoad failed in loadNamespace() for 'org.Hs.eg.db'"
6 years, 2 months ago
The city by the bay
EdgeR - blocking for multiple factors at once - Errors
6 years, 2 months ago
The city by the bay
Building contrasts for combined treatment groups to compare to a control
6 years, 2 months ago
The city by the bay
applying voom + limma to a block factor design in RNA-seq experiment
6 years, 2 months ago
The city by the bay
edgeR normalisation factors different between experimental groups
6 years, 2 months ago
The city by the bay
Representative gene expression value in one condition with several replicates
6 years, 2 months ago
United States
Where to download expected counts instead of normalized RSEM for TCGA LUAD?
6 years, 2 months ago
The city by the bay
A: limma-voom duplicateCorrelation once or twice, difference?
6 years, 2 months ago
WEHI, Melbourne, Australia
A: DelayedArray seeds: SolidRleArraySeed vs ChunkedRleArraySeed vs DataFrame of Rle
6 years, 2 months ago
EMBL Heidelberg
A: BioParallel::BatchtoolsParam() - how to pass customized resource variables to ba
6 years, 2 months ago
United States
A: How to set up appropriate analysis using sample type and condition for DESeq2
6 years, 3 months ago
The city by the bay
A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
6 years, 3 months ago
The city by the bay
A: How to calculate average log2 CPM with batch effect?
6 years, 3 months ago
United States
A: Interpreting the results from lfcShrink() with apeglm in DESeq2
6 years, 3 months ago
EMBL Heidelberg
Is there a way to tell biocLite() to install a Bioconductor package only if it is not installed already?
6 years, 3 months ago
EMBL Heidelberg
BioParallel::BatchtoolsParam() - how to pass customized resource variables to batchtool's "slurm-simple" template using BatchtoolsParam()?
6 years, 3 months ago
United States
Q score filter: 90% of the q scores from a QualityScaledDNAStringSet are above 30.
6 years, 3 months ago
United States
How does DESeq2 handle zero counts in one condition?
6 years, 3 months ago
United States
How to set up appropriate analysis using sample type and condition for DESeq2
6 years, 3 months ago
Cambridge, UK
Differential analysis of multiple samples with different time points
6 years, 3 months ago
WEHI, Melbourne, Australia
A: nestedF in decideTests: an analogue of Anova with post-hoc t-tests?
6 years, 3 months ago
United States
DE genes comparison of different treatments from microarray and RNAseq data
6 years, 3 months ago
United States
trying to annotate overlaps with external file information
6 years, 3 months ago
United States
A: Design and Contrast Matrix for Linear Model. To Combine or not to Combine?
6 years, 3 months ago
Icahn School of Medicine at Mount Sinai…
Voom transformation from counts and normalization to negative values
6 years, 3 months ago
United States
A: ChIPseeker/Question about ''annoatePeak' function and for Bioconductor Annotatio
6 years, 3 months ago
University of Padova
RUVseq PCA on raw data, whereas DESeq suggests stabilization
6 years, 3 months ago
Switzerland
Create custom IdeogramTrack (Gviz)
6 years, 3 months ago
Austria
[xps] Problems building scheme for DroGene 1.1 ST arrays in xps
6 years, 3 months ago
Seattle, WA, United States
Extracting Coordinates of startcodon from Grangeslist
6 years, 3 months ago
Seattle, WA, United States
Calling coverage on GRanges object yields small negative values
6 years, 3 months ago
WEHI, Melbourne, Australia
A: Incorporating subject ID as random effect for repeated measures RNA-Seq analysis
6 years, 4 months ago
Canada
A: Meta-analysis of microarrays (and RNA-seq) data
6 years, 4 months ago
United States
A: EdgeR blocking and "All combinations of multiple factors"
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