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Comment: Comment: gene set enrichment analysis with enrichKEGG (clusterProfiler) returns very few
3.8 years ago Emilia ▴ 40
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gene set enrichment analysis with enrichKEGG (clusterProfiler) returns very few enriched pathways
clusterProfiler KEGG GSEA
3.8 years ago Emilia ▴ 40
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Comment: Comment: Plot terms with a NES < 0 GSEA results from gseGO
3.8 years ago Emilia ▴ 40
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Comment: Comment: Can I create a gene set using GAGE?
3.9 years ago Emilia ▴ 40
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Can I create a gene set using GAGE?
gage pathview gageData
written 3.9 years ago by ▴ 40
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Comment: Comment: Cut down genes displayed on x axis from enrichPlot's heatplot() function
3.9 years ago Emilia ▴ 40
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7.7k
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Comment: Comment: color scale in cnetplot (enrichplot) is not centered in 0, skewed towards positi
3.9 years ago Emilia ▴ 40
0
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1
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7.7k
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Comment: Comment: color scale in cnetplot (enrichplot) is not centered in 0, skewed towards positi
3.9 years ago Emilia ▴ 40
0
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1
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7.7k
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Comment: Comment: color scale in cnetplot (enrichplot) is not centered in 0, skewed towards positi
3.9 years ago Emilia ▴ 40
2
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6
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7.7k
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color scale in cnetplot (enrichplot) is not centered in 0, skewed towards positive values
enrichplot clusterProfiler
3.9 years ago Emilia ▴ 40
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1.5k
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Comment: Comment: loadTableData function from RCy3 returns "Failed to load data: Provided key colu
3.9 years ago Emilia ▴ 40
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1
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1.5k
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Comment: Comment: loadTableData function from RCy3 returns "Failed to load data: Provided key colu
3.9 years ago Emilia ▴ 40
2
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4
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3.8k
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I want to make a geneList for clusterProfiler analysis but I get "error in do.call( cbind lapply(x is.na )) variable names are limited to 10000 bytes"
clusterProfiler
4.0 years ago Emilia ▴ 40
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Comment: Comment: I want to make a geneList for clusterProfiler analysis but I get "error in do.ca
4.0 years ago Emilia ▴ 40
0
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1
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3.8k
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Comment: Comment: I want to make a geneList for clusterProfiler analysis but I get "error in do.ca
4.0 years ago Emilia ▴ 40
1
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3
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1.5k
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loadTableData function from RCy3 returns "Failed to load data: Provided key columns do not contain any matches"
Cytoscape Pathways Wikipathways rWikiPathways RCy3
4.0 years ago • updated 3.9 years ago Emilia ▴ 40
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Gene conversion from SYMBOL to ENTREZ using AnnotationDbi doesn't convert some of the genes
AnnotationDbi org.Hs.eg.db
4.0 years ago Emilia ▴ 40
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3.0k
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Comment: Comment: Gene conversion from SYMBOL to ENTREZ using AnnotationDbi doesn't convert some o
4.0 years ago Emilia ▴ 40
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