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Comment: C: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
4.3 years ago Biologist ▴ 110
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Comment: C: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
4.3 years ago Biologist ▴ 110
0
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1
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2.7k
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Comment: C: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
4.3 years ago Biologist ▴ 110
0
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1
reply
2.7k
views
Comment: C: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
4.3 years ago Biologist ▴ 110
1
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0
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2.7k
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Comment: C: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
4.3 years ago Biologist ▴ 110
0
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1
reply
2.7k
views
Comment: C: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
4.3 years ago Biologist ▴ 110
7
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13
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2.7k
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How to extract phastcons score for all protein coding genes and lncRNAs using GenomicScores?
genomicscores granges phastCons100way.UCSC.hg38 r rtracklayer
updated 4.3 years ago by ★ 3.3k • written 4.3 years ago by ▴ 110
0
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1
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3.2k
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Comment: C: Use of batch corrected (removeBatchEffect) read counts for further downstream an
5.1 years ago Biologist ▴ 110
0
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0
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1.7k
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Comment: C: edgeR removing batch effect before using expression data for clustering
5.1 years ago Biologist ▴ 110
0
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1
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1.7k
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Comment: C: edgeR removing batch effect before using expression data for clustering
5.1 years ago Biologist ▴ 110
0
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1
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1.7k
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Comment: C: edgeR removing batch effect before using expression data for clustering
5.1 years ago Biologist ▴ 110
1
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6
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1.7k
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edgeR removing batch effect before using expression data for clustering
edger r batcheffect clustering removeBatchEffect
updated 5.1 years ago by 66k • written 5.1 years ago by ▴ 110
0
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0
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3.7k
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Comment: C: How to get t-statistic values using edgeR?
5.2 years ago Biologist ▴ 110
0
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2
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3.7k
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Comment: C: How to get t-statistic values using edgeR?
5.2 years ago Biologist ▴ 110
8
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5
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3.7k
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How to get t-statistic values using edgeR?
r edger t-statistic fgsea gsea
updated 5.2 years ago by 51k • written 5.2 years ago by ▴ 110
0
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0
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2.8k
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Comment: C: EdgeR for differential analysis between two cell lines without replication
6.0 years ago Biologist ▴ 110
3
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8
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2.8k
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EdgeR for differential analysis between two cell lines without replication
edger differential gene expression rnaseq
updated 6.0 years ago by 51k • written 6.0 years ago by ▴ 110
0
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1
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2.8k
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Comment: C: EdgeR error for differential analysis between two cell lines
6.0 years ago Biologist ▴ 110
0
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1
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2.8k
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Comment: C: EdgeR error for differential analysis between two cell lines
6.0 years ago Biologist ▴ 110
0
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0
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2.2k
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Comment: C: Does Fold change cutoff changes the FDR value using glmTreat function in edgeR?
6.0 years ago Biologist ▴ 110
3
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4
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2.2k
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Does Fold change cutoff changes the FDR value using glmTreat function in edgeR?
edgeR r bioconductor diffferential expression fdr
updated 6.0 years ago by 66k • written 6.0 years ago by ▴ 110
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0
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2.2k
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Comment: C: Does Fold change cutoff changes the FDR value using glmTreat function in edgeR?
6.0 years ago Biologist ▴ 110
5
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4
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2.8k
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Why DESeq2 and edgeR give different results?
deseq2 rnaseq differential gene expression edger
updated 3.1 years ago by 51k • written 6.1 years ago by ▴ 110
0
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0
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2.8k
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Comment: C: Why DESeq2 and edgeR give different results?
6.1 years ago Biologist ▴ 110
0
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0
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2.8k
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Comment: C: Why DESeq2 and edgeR give different results?
6.1 years ago Biologist ▴ 110
0
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1
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6.8k
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Comment: C: Filtering step for differential analysis in edgeR
6.1 years ago Biologist ▴ 110
0
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1
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6.8k
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Comment: C: Filtering step for differential analysis in edgeR
6.1 years ago Biologist ▴ 110
0
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1
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6.8k
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Comment: C: Filtering step for differential analysis in edgeR
6.1 years ago Biologist ▴ 110
5
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12
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6.8k
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Filtering step for differential analysis in edgeR
r edger differential gene expression filtering bioconductor
updated 6.1 years ago by 51k • written 6.1 years ago by ▴ 110
0
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1
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6.8k
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Comment: C: Filtering step for differential analysis in edgeR
6.1 years ago Biologist ▴ 110
0
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1
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6.8k
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Comment: C: Filtering step for differential analysis in edgeR
6.1 years ago Biologist ▴ 110
0
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1
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5.0k
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Comment: C: Principle component analysis plot with gene expression data
6.2 years ago Biologist ▴ 110
0
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1
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5.0k
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Comment: C: Principle component analysis plot with gene expression data
6.2 years ago Biologist ▴ 110
3
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6
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5.0k
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Principle component analysis plot with gene expression data
r pca rnaseq edger ggbiplot
updated 6.2 years ago by 66k • written 6.2 years ago by ▴ 110
0
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1
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3.3k
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Comment: C: How to check the read length for all the TCGA data samples in GDC?
6.2 years ago Biologist ▴ 110
1
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1
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3.3k
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Comment: C: How to check the read length for all the TCGA data samples in GDC?
6.2 years ago Biologist ▴ 110
17
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8
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3.3k
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How to check the read length for all the TCGA data samples in GDC?
gdc tcga wes gdc data
updated 6.2 years ago by 21k • written 6.2 years ago by ▴ 110
0
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0
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3.3k
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Comment: C: How to check the read length for all the TCGA data samples in GDC?
6.2 years ago Biologist ▴ 110
0
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1
reply
40k
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Comment: C: Differential expression analysis starting from TPM data
6.2 years ago Biologist ▴ 110
0
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1
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40k
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Comment: C: Differential expression analysis starting from TPM data
6.3 years ago Biologist ▴ 110
0
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1
reply
1.5k
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Comment: C: kegga error from edgeR
6.4 years ago Biologist ▴ 110
0
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3
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1.5k
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kegga error from edgeR
edger r bioconductor pathway analysis kegg
updated 6.4 years ago by 51k • written 6.4 years ago by ▴ 110
0
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2
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1.1k
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Differential analysis between single sample vs single sample (control vs treatment) with no replicates
r bioconductor limma edger deseq2
updated 6.5 years ago by ★ 28k • written 6.5 years ago by ▴ 110
0
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0
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1.6k
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Comment: C: how to reformat complex list object (derived with TCGAbiolinks)?
6.5 years ago Biologist ▴ 110
1
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3
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4.4k
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How to select top 10% highly variable genes in microarray data?
r microarray snp6.0 oligo
updated 6.5 years ago by ▴ 350 • written 6.5 years ago by ▴ 110
0
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0
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4.4k
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Comment: C: How to select top 10% highly variable genes in microarray data?
6.5 years ago Biologist ▴ 110
0
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3
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1.5k
views
Root installation for xps on cluster
xps root
updated 6.6 years ago by • 0 • written 8.2 years ago by ▴ 110
0
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0
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1.6k
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Answer: A: TCGABiolinks::GDCquery() suddenly sending back unknown error
6.7 years ago Biologist ▴ 110
1
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3
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1.4k
views
How to normalize Microarray expression data?
r affymetrix microarrays normalization bioconductor
updated 6.8 years ago by 66k • written 6.8 years ago by ▴ 110
0
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0
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2.4k
views
Comment: C: Why Differential expression results differ with edgeR and limma ?
6.9 years ago Biologist ▴ 110
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