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Significantly regulated genes produced by only a few affected samples
deseq2
written 6.8 years ago by ▴ 60
0
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0
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1.1k
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SNPRelate handling of missing genotypes
SNPRelate
2.9 years ago serpalma.v ▴ 60
0
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0
replies
850
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Comment: Comment: extracting within time-point differences from time-series model
3.6 years ago serpalma.v ▴ 60
0
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2
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850
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extracting within time-point differences from time-series model
DESeq2 TimeCourse
3.6 years ago serpalma.v ▴ 60
0
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1
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1.1k
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Different order of samples in output of snpgdsSlidingWindow to calculate Fst and aggregation method
SNPRelate
updated 5.6 years ago by ▴ 30 • written 5.6 years ago by ▴ 60
1
vote
1
reply
1.2k
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PCA axis description SNPRelate
SNPRelate PCA
updated 5.7 years ago by ▴ 870 • written 5.7 years ago by ▴ 60
2
votes
1
reply
918
views
Meaning of the intercept when betaPrior is TRUE?
deseq2
updated 6.8 years ago by 43k • written 6.8 years ago by ▴ 60
0
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1
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3.5k
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Comment: C: Significantly regulated genes produced by only a few affected samples
6.8 years ago serpalma.v ▴ 60
0
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0
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3.5k
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Comment: C: Significantly regulated genes produced by only a few affected samples
6.8 years ago serpalma.v ▴ 60
0
votes
2
replies
3.5k
views
Comment: C: Significantly regulated genes produced by only a few affected samples
6.8 years ago serpalma.v ▴ 60
9
votes
1
reply
5.0k
views
Should I contrast 2 treatment groups using the control group as reference or directly against each other?
deseq2 model.matrix GLM contrast
updated 6.9 years ago by 43k • written 6.9 years ago by ▴ 60
0
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1
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1.7k
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Comment: C: Multiple test corrections for planed contrasts
updated 7.0 years ago by 43k • written 7.0 years ago by ▴ 60
2
votes
4
replies
1.7k
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Multiple test corrections for planed contrasts
deseq2 multiple comparisons contrast
updated 7.0 years ago by 67k • written 7.0 years ago by ▴ 60
0
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0
replies
2.5k
views
Comment: C: Imputation method selection (mass spectrometry) bimodal distribution
7.1 years ago serpalma.v ▴ 60
2
votes
3
replies
2.5k
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Imputation method selection (mass spectrometry) bimodal distribution
impute missing value imputation DEP massspectrometry
updated 7.1 years ago by 1.6k • written 7.1 years ago by ▴ 60
0
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2
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3.4k
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Comment: C: matching probes to genes from pd.porgene.1.1.st array
8.2 years ago serpalma.v ▴ 60
0
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1
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3.4k
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Comment: C: matching probes to genes from pd.porgene.1.1.st array
8.2 years ago serpalma.v ▴ 60
0
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1
reply
6.6k
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Comment: C: Does limma calculate pvalues using log2 fold changes or with linear values?
8.7 years ago serpalma.v ▴ 60
6
votes
8
replies
6.6k
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Does limma calculate pvalues using log2 fold changes or with linear values?
limma pvalue log2fc log2
updated 2.1 years ago by 67k • written 8.7 years ago by ▴ 60
0
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0
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6.6k
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Comment: C: Does limma calculate pvalues using log2 fold changes or with linear values?
8.7 years ago serpalma.v ▴ 60
1
vote
3
replies
1.8k
views
Discrepancy in gene set size between gage() and geneData()
gage gene set analysis pathview kegg pathway analysis
8.8 years ago serpalma.v ▴ 60
0
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1
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1.8k
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Answer: A: Discrepancy in gene set size between gage() and geneData()
8.8 years ago serpalma.v ▴ 60
0
votes
0
replies
1.3k
views
Low yield mapping ensembl transcript ids to entrez gene ids in biomart
biomart ensembl ensemble mart entrez gene identifiers
8.9 years ago serpalma.v ▴ 60
0
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1
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2.2k
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Comment: C: Why are there so many not annotated probes in the PorGene-1_1-st affymetrix arra
8.9 years ago serpalma.v ▴ 60
2
votes
3
replies
2.2k
views
Why are there so many not annotated probes in the PorGene-1_1-st affymetrix array?
affymetrix microarrays pd.porgene.1.1.st annotation probe to gene id pathway analysis
updated 8.9 years ago by 67k • written 8.9 years ago by ▴ 60
0
votes
1
reply
1.8k
views
Comment: C: How to define an outlier array from PCA?
8.9 years ago serpalma.v ▴ 60
3
votes
3
replies
1.8k
views
How to define an outlier array from PCA?
microarray PCA outliers sample outliers limma
updated 8.9 years ago by ★ 28k • written 8.9 years ago by ▴ 60
7
votes
8
replies
5.5k
views
Model matrix for anova in limma
limma design matrix microarray limma
updated 8.9 years ago by ★ 13k • written 9.0 years ago by ▴ 60
1
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1
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5.5k
views
Answer: A: Model matrix for anova in limma
8.9 years ago serpalma.v ▴ 60
0
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1
reply
5.5k
views
Comment: C: Model matrix for anova in limma
8.9 years ago serpalma.v ▴ 60
0
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1
reply
5.5k
views
Answer: A: Model matrix for anova in limma
9.0 years ago serpalma.v ▴ 60
0
votes
3
replies
1.4k
views
intron/exon spanning probes present in the microarray
MA microarray
9.0 years ago serpalma.v ▴ 60
0
votes
1
reply
1.4k
views
Answer: A: intron/exon spanning probes present in the microarray
9.0 years ago serpalma.v ▴ 60
2
votes
10
replies
3.4k
views
matching probes to genes from pd.porgene.1.1.st array
pd.porgene.1.1.st affymetrix microarrays
updated 9.0 years ago by 67k • written 9.0 years ago by ▴ 60
0
votes
1
reply
3.4k
views
Answer: A: matching probes to genes from pd.porgene.1.1.st array
9.0 years ago serpalma.v ▴ 60
0
votes
3
replies
1.5k
views
GenomiFeatures is not available for R version 3.2.1
GenomiFeatures rversion3.2.1 3.0 rstudio
9.2 years ago serpalma.v ▴ 60
0
votes
1
reply
1.5k
views
Answer: A: GenomiFeatures is not available for R version 3.2.1
9.2 years ago serpalma.v ▴ 60
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