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6
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890
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Once again a "Model matrix not full rank"
DESeq2
design
coldata
updated 11 months ago by
swbarnes2
★ 1.4k • written 11 months ago by
arfranco
▴ 130
0
votes
1
reply
890
views
Comment:
Comment: Once again a "Model matrix not full rank"
11 months ago
arfranco
▴ 130
0
votes
1
reply
890
views
Comment:
Comment: Once again a "Model matrix not full rank"
11 months ago
arfranco
▴ 130
0
votes
0
replies
1.1k
views
Comment:
Comment: Confounding DE results with DESeq2
3.1 years ago
arfranco
▴ 130
2
votes
2
replies
1.1k
views
Confounding DE results with DESeq2
isoforms
DESeq2
3.1 years ago
arfranco
▴ 130
0
votes
1
reply
1.2k
views
Comment:
C: Installation path not writable
5.2 years ago
arfranco
▴ 130
0
votes
0
replies
1.1k
views
Answer:
A: What will lead DESeq2 shows no DEGs if workflow adopted is okay?
6.1 years ago
arfranco
▴ 130
1
vote
1
reply
710
views
What do you do with the DESeq2 NA results ?. How do you manage them ?
DESeq2
NA values
updated 7.2 years ago by
Michael Love
43k • written 7.2 years ago by
arfranco
▴ 130
0
votes
0
replies
1.5k
views
Answer:
A: Differential expression of RNA seq data at gene level (for Beginner)
7.3 years ago
arfranco
▴ 130
0
votes
1
reply
4.1k
views
Answer:
A: Generate 3' UTR and 5' UTR ranges from a gff file
7.3 years ago
arfranco
▴ 130
0
votes
0
replies
1.6k
views
Comment:
C: limma. After running a differential expression analysis... Can you get the indiv
7.4 years ago
arfranco
▴ 130
0
votes
1
reply
1.6k
views
Answer:
A: limma. After running a differential expression analysis... Can you get the indiv
7.4 years ago
arfranco
▴ 130
0
votes
4
replies
1.6k
views
limma. After running a differential expression analysis... Can you get the individual gene expression levels between individual contrasts for each of…
limma
gene expression
differential gene expression
7.4 years ago
arfranco
▴ 130
0
votes
1
reply
1.6k
views
Answer:
A: limma. After running a differential expression analysis... Can you get the indiv
7.4 years ago
arfranco
▴ 130
0
votes
0
replies
1.4k
views
Comment:
C: RNA-seq analysis without replicates using tximport and DESeq2
8.4 years ago
arfranco
▴ 130
7
votes
8
replies
3.0k
views
Very small bug in DESeq2
software error
8.5 years ago
arfranco
▴ 130
1
vote
1
reply
3.0k
views
Answer:
A: Very small bug in DESeq2
8.5 years ago
arfranco
▴ 130
1
vote
0
replies
3.0k
views
Comment:
C: Very small bug in DESeq2
8.5 years ago
arfranco
▴ 130
0
votes
1
reply
3.0k
views
Answer:
A: Very small bug in DESeq2
8.5 years ago
arfranco
▴ 130
0
votes
1
reply
2.0k
views
Answer:
A: Limma Elist subsetting
8.8 years ago
arfranco
▴ 130
4
votes
4
replies
2.0k
views
Limma Elist subsetting
microarray
limma
subsetting
8.8 years ago
arfranco
▴ 130
0
votes
1
reply
1.3k
views
Answer:
A: Methylation and gene expression data
8.9 years ago
arfranco
▴ 130
0
votes
0
replies
2.3k
views
Comment:
C: Error: could not find function "HTSeqCounts"
9.0 years ago
arfranco
▴ 130
0
votes
0
replies
2.3k
views
Answer:
A: Error: could not find function "HTSeqCounts"
9.0 years ago
arfranco
▴ 130
0
votes
1
reply
2.3k
views
Answer:
A: Error: could not find function "HTSeqCounts"
9.0 years ago
arfranco
▴ 130
0
votes
0
replies
4.3k
views
Answer:
A: How to import data to R
9.1 years ago
arfranco
▴ 130
2
votes
0
replies
10k
views
Answer:
A: converting integer to numeric
9.3 years ago
arfranco
▴ 130
0
votes
0
replies
1.9k
views
Answer:
A: Package installation errors for Bioconductor and easyRNASeq
9.3 years ago
arfranco
▴ 130
9
votes
1
reply
3.5k
views
limma Time Course Experiment with many time points
limma
RNA-Seq
updated 9.4 years ago by
Aaron Lun
★ 28k • written 9.4 years ago by
arfranco
▴ 130
0
votes
0
replies
847
views
Answer:
A: Problems with clustering a micro array data using R
9.5 years ago
arfranco
▴ 130
6
votes
3
replies
20k
views
limma p-value and adjusted p-value meaning
limma
9.6 years ago
arfranco
▴ 130
0
votes
1
reply
20k
views
Answer:
A: limma p-value and adjusted p-value meaning
9.6 years ago
arfranco
▴ 130
0
votes
0
replies
1.5k
views
Comment:
C: microarray agilent data
9.7 years ago
arfranco
▴ 130
0
votes
1
reply
1.5k
views
Answer:
A: microarray agilent data
9.7 years ago
arfranco
▴ 130
0
votes
0
replies
10k
views
Answer:
A: DESeq2: Starting from count tables
9.7 years ago
arfranco
▴ 130
0
votes
0
replies
2.5k
views
Answer:
A: Normalize between Arrays (Agilent two color)
9.7 years ago
arfranco
▴ 130
0
votes
0
replies
3.2k
views
Comment:
C: reading a *.txt file of expression values into an AffyBatch
9.7 years ago
arfranco
▴ 130
0
votes
1
reply
3.2k
views
Answer:
A: reading a *.txt file of expression values into an AffyBatch
9.7 years ago
arfranco
▴ 130
1
vote
1
reply
3.9k
views
Comment:
C: matrix transposing in R
9.8 years ago
arfranco
▴ 130
1
vote
1
reply
3.9k
views
Comment:
C: matrix transposing in R
9.8 years ago
arfranco
▴ 130
2
votes
2
replies
3.9k
views
Answer:
A: matrix transposing in R
9.8 years ago
arfranco
▴ 130
2
votes
0
replies
3.9k
views
Answer:
A: matrix transposing in R
9.8 years ago
arfranco
▴ 130
0
votes
0
replies
1.8k
views
Answer:
A: Newbie - Adding Labels to Individual Genes with ggbio?
9.8 years ago
arfranco
▴ 130
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