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Comment: Comment: DeSeq2 design fails (full model matrix is less than full rank)
14 months ago Theo ▴ 10
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1
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755
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Comment: Comment: DeSeq2 design fails (full model matrix is less than full rank)
14 months ago Theo ▴ 10
0
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5
replies
755
views
DeSeq2 design fails (full model matrix is less than full rank)
DESeq2
updated 14 months ago by 67k • written 14 months ago by ▴ 10
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1.2k
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Comment: Comment: DESeq2 alternative hypyothesis: testing for genes NOT significantly downregulate
15 months ago Theo ▴ 10
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1.2k
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Comment: Comment: diffbind dba.count error "files could not be accessed" on windows 11
16 months ago Theo ▴ 10
0
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1
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1.2k
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Comment: Comment: diffbind dba.count error "files could not be accessed" on windows 11
16 months ago Theo ▴ 10
1
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4
replies
1.2k
views
diffbind dba.count error "files could not be accessed" on windows 11
DiffBind
16 months ago Theo ▴ 10
0
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1
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2.0k
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Comment: Comment: ranking the DeSeq2 results using t-values?
17 months ago Theo ▴ 10
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0
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2.0k
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Comment: Comment: ranking the DeSeq2 results using t-values?
17 months ago Theo ▴ 10
0
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1
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2.0k
views
Comment: Comment: ranking the DeSeq2 results using t-values?
17 months ago Theo ▴ 10
0
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9
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2.0k
views
ranking the DeSeq2 results using t-values?
DESeq2
updated 17 months ago by 43k • written 17 months ago by ▴ 10
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1
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2.0k
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Comment: Comment: ranking the DeSeq2 results using t-values?
17 months ago Theo ▴ 10
0
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1
reply
1.1k
views
Comment: Comment: how to iterate all comparisons in group with "coef =" ?
22 months ago Theo ▴ 10
0
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3
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1.1k
views
how to iterate all comparisons in group with "coef =" ?
DESeq2
updated 22 months ago by 43k • written 22 months ago by ▴ 10
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1.6k
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use diffbind with normilized bedgraph files from spike ins
diffbind chip-seq chip spike spike-ins
updated 4.5 years ago by ★ 5.2k • written 4.6 years ago by ▴ 10
1
vote
4
replies
1.1k
views
in diffbind dba.peakset what is the meaning of minOverlap?
diffbind chip-seq dba.peakset
updated 5.1 years ago by ★ 5.2k • written 5.2 years ago by ▴ 10
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0
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1.1k
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Comment: C: in diffbind dba.peakset what is the meaning of minOverlap?
5.1 years ago Theo ▴ 10
0
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1
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1.1k
views
Comment: C: in diffbind dba.peakset what is the meaning of minOverlap?
5.1 years ago Theo ▴ 10
0
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1
reply
780
views
Comment: C: diffbind plotVenn by Factor
5.1 years ago Theo ▴ 10
0
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3
replies
780
views
diffbind plotVenn by Factor
diffbind plotVenn
updated 5.1 years ago by ★ 5.2k • written 5.2 years ago by ▴ 10
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1
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1.8k
views
Comment: C: DeSeq2 Design (A-B)-(C-D)
5.2 years ago Theo ▴ 10
0
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1
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1.8k
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Comment: C: DeSeq2 Design (A-B)-(C-D)
5.2 years ago Theo ▴ 10
0
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0
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1.5k
views
Comment: C: diffbind dba.plotvolcano bLabels option use genames instead of numbers
5.2 years ago Theo ▴ 10
0
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1
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1.5k
views
Comment: C: diffbind dba.plotvolcano bLabels option use genames instead of numbers
5.3 years ago Theo ▴ 10
0
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4
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1.5k
views
diffbind dba.plotvolcano bLabels option use genames instead of numbers
diffbind
updated 5.3 years ago by ★ 5.2k • written 5.4 years ago by ▴ 10
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0
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1.9k
views
Answer: A: Normalized count in edger
5.4 years ago Theo ▴ 10
0
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1
reply
3.0k
views
error in readPeakFile {chipseeker}
ChIPseeker readPeakFile
5.6 years ago Theo ▴ 10
0
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0
replies
1.3k
views
Comment: C: Problem in using covplot ChIPseeker
5.6 years ago Theo ▴ 10
0
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1
reply
2.2k
views
Comment: C: atacseqQC error while splittin the bamfile
5.6 years ago Theo ▴ 10
0
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0
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2.2k
views
Comment: C: atacseqQC error while splittin the bamfile
5.6 years ago Theo ▴ 10
0
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6
replies
2.2k
views
atacseqQC error while splittin the bamfile
ATACseqQC ATAC-seq error split bam file
updated 5.6 years ago by • 0 • written 5.6 years ago by ▴ 10
0
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0
replies
1.3k
views
Is it possible to use Rnbeads with WGBS data from epigenetics roadmap/ucsc data
rnbeads wgbs
7.2 years ago Theo ▴ 10
0
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0
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1.8k
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Comment: C: FourCseq: getZScores errors, first case 6 digenerated cutterm second case 4 base
8.3 years ago Theo ▴ 10
0
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0
replies
1.2k
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Comment: C: FourCseq, rawRanges Description
8.3 years ago Theo ▴ 10
0
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2
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1.2k
views
FourCseq, rawRanges Description
fourcseq
updated 8.3 years ago by ▴ 150 • written 8.3 years ago by ▴ 10
1
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8
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1.8k
views
FourCseq: getZScores errors, first case 6 digenerated cutterm second case 4 base cutter
fourcseq
8.4 years ago • updated 8.3 years ago Theo ▴ 10
0
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1
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1.8k
views
Answer: A: FourCseq: getZScores errors, first case 6 digenerated cutterm second case 4 base
8.3 years ago Theo ▴ 10
0
votes
1
reply
1.8k
views
Comment: C: FourCseq: getZScores errors, first case 6 digenerated cutterm second case 4 base
8.3 years ago Theo ▴ 10
0
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1
reply
1.8k
views
Answer: A: FourCseq: getZScores errors, first case 6 digenerated cutterm second case 4 base
8.3 years ago Theo ▴ 10
0
votes
2
replies
1.1k
views
FourCseq: mixed amount of replication/samples
fourcseq
8.4 years ago Theo ▴ 10
0
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0
replies
1.1k
views
Answer: A: FourCseq: mixed amount of replication/samples
8.4 years ago Theo ▴ 10
0
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0
replies
1.1k
views
Answer: A: Basic4Cseq, degenerate sites
8.4 years ago Theo ▴ 10
0
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2
replies
1.1k
views
Basic4Cseq, degenerate sites
Basic4Cseq basic4cseq degenerate sites
8.4 years ago Theo ▴ 10
0
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1
reply
4.3k
views
Comment: C: FourCseq - error countFragmentOverlaps()
8.4 years ago Theo ▴ 10
0
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0
replies
1.1k
views
r3cseq error after finishing the work
r3cseq 4c
9.3 years ago Theo ▴ 10
0
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0
replies
4.3k
views
Comment: C: FourCseq - error countFragmentOverlaps()
9.5 years ago Theo ▴ 10
0
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1
reply
4.3k
views
Comment: C: FourCseq - error countFragmentOverlaps()
9.5 years ago Theo ▴ 10
4
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27
replies
4.3k
views
FourCseq - error countFragmentOverlaps()
FourCseq fourcseq
updated 9.5 years ago by • 0 • written 9.5 years ago by ▴ 10
0
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1
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4.3k
views
Answer: A: FourCseq - error countFragmentOverlaps()
9.5 years ago Theo ▴ 10
0
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0
replies
4.3k
views
Answer: A: FourCseq - error countFragmentOverlaps()
9.5 years ago Theo ▴ 10
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