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Comment: C: Testing Interactions without an interaction term in the design formula
5.6 years ago colaneri ▴ 30
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Comment: C: Testing Interactions without an interaction term in the design formula
5.6 years ago colaneri ▴ 30
0
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0
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1.2k
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Comment: C: Error when creating a DESeqDataSet object
5.6 years ago colaneri ▴ 30
1
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5
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1.0k
views
Testing Interactions without an interaction term in the design formula
deseq2 interactions
updated 5.6 years ago by 43k • written 5.6 years ago by ▴ 30
0
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2
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1.2k
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Error when creating a DESeqDataSet object
deseq2 DESeqDataSet
updated 5.6 years ago by 43k • written 5.6 years ago by ▴ 30
0
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1
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2.2k
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Answer: A: How to produce a dataframe with unique ENTREZID to use in gage?
6.8 years ago colaneri ▴ 30
0
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3
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2.2k
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How to produce a dataframe with unique ENTREZID to use in gage?
gage annotationdbi entrez ensembl
6.8 years ago colaneri ▴ 30
0
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0
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1.8k
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Answer: A: Error when installing package gageData
6.8 years ago colaneri ▴ 30
0
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2
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1.8k
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Error when installing package gageData
gage kegg
6.8 years ago colaneri ▴ 30
0
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1
reply
1.1k
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How to update the list of genes mapped to GO terms in the topGO object?
topgo go
7.7 years ago colaneri ▴ 30
1
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6
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1.9k
views
goseq Error: could not find function "supportedOrganisms"
goseq
updated 7.7 years ago by • 0 • written 7.7 years ago by ▴ 30
1
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2
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1.5k
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Error when using the showGroupDensity function in topGO
topGO
updated 7.7 years ago by 67k • written 7.7 years ago by ▴ 30
0
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0
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1.0k
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topGO plotting options: It is possible to control the number of nodes in the DAG plot according with their p values?
topgo DAG
7.7 years ago colaneri ▴ 30
0
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1
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1.9k
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Comment: C: goseq Error: could not find function "supportedOrganisms"
7.7 years ago colaneri ▴ 30
0
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0
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1.9k
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Problem when using topGO for RNAseq data: The number of annotated genes for GO terms changes according to the number of genes in the gene-background-…
topGO gene ontolology rnaseq
7.7 years ago colaneri ▴ 30
0
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0
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1.6k
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Comment: C: Missing GenBank accession numbers in the org.Hs.egACCNUM object?
7.8 years ago colaneri ▴ 30
0
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2
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1.6k
views
Missing GenBank accession numbers in the org.Hs.egACCNUM object?
org.hs.eg.db bioconductor
updated 7.8 years ago by 67k • written 7.8 years ago by ▴ 30
0
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1
reply
4.8k
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Comment: C: DESeq2, Still a most genes get padj=NA after declare cooksCutoff=FALSE in the re
8.7 years ago colaneri ▴ 30
0
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3
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4.8k
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DESeq2, Still a most genes get padj=NA after declare cooksCutoff=FALSE in the results () function
deseq2 NA cooksCutoff
updated 8.7 years ago by 43k • written 8.7 years ago by ▴ 30
0
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1
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2.0k
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Comment: C: How to make sense of the fold change values in the interaction results object.
8.7 years ago colaneri ▴ 30
1
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1
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2.0k
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Comment: C: How to make sense of the fold change values in the interaction results object.
8.7 years ago colaneri ▴ 30
2
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5
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2.0k
views
How to make sense of the fold change values in the interaction results object.
deseq2 logfoldchange interactions
updated 8.7 years ago by 43k • written 8.7 years ago by ▴ 30
0
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1
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5.1k
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Comment: C: how to design a formula in DEseq2 that control for the effect of putative confo
8.7 years ago colaneri ▴ 30
2
votes
3
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11k
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Remove genes with very low counts for all samples or let DESeq2 perform independent filtering?
deseq2 independent filtering lowcountgenes
updated 8.7 years ago by 43k • written 8.7 years ago by ▴ 30
0
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1
reply
5.1k
views
Comment: C: how to design a formula in DEseq2 that control for the effect of putative confo
8.8 years ago colaneri ▴ 30
0
votes
5
replies
5.1k
views
how to design a formula in DEseq2 that control for the effect of putative confounders?
Deseq2 dds confounders
updated 8.9 years ago by 43k • written 8.9 years ago by ▴ 30
0
votes
1
reply
2.1k
views
How to install S4Vector package in R v 3.1.1?
s4vectors R 3.1.1
updated 9.5 years ago by 16k • written 9.5 years ago by ▴ 30
0
votes
1
reply
1.6k
views
Error when trying to plot sample distance from and assay object generated with DESeq2
deseq2 heatmap.2
updated 9.5 years ago by 43k • written 9.5 years ago by ▴ 30
0
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0
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3.1k
views
Answer: A: Error: could not find function "rlog"
9.5 years ago colaneri ▴ 30
0
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2
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3.1k
views
Error: could not find function "rlog"
deseq2
9.5 years ago colaneri ▴ 30
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