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Error retrieving cytobands from UCSC
biovizBase biovi
updated 14 months ago by 67k • written 14 months ago by ▴ 150
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1.8k
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Answer: Answer: karyoploteR genome coverage plotting using BSgenome.TAIR10
2.1 years ago bernatgel ▴ 150
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2
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1.4k
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Support for CSI indexes in Rsamtools
Rsamtools
3.9 years ago bernatgel ▴ 150
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1.4k
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Comment: Comment: Support for CSI indexes in Rsamtools
3.9 years ago bernatgel ▴ 150
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1.1k
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Answer: A: need help with overlap overrepresentation using permutation tests for composite
4.1 years ago bernatgel ▴ 150
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3.2k
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Answer: A: How to create manhattan plot with DESeq2
4.1 years ago bernatgel ▴ 150
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1.2k
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Comment: C: PTEN missing from TxDb.Hsapiens.UCSC.hg38.knownGene?
4.8 years ago bernatgel ▴ 150
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2
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1.2k
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Comment: C: PTEN missing from TxDb.Hsapiens.UCSC.hg38.knownGene?
4.8 years ago bernatgel ▴ 150
6
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5
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1.2k
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PTEN missing from TxDb.Hsapiens.UCSC.hg38.knownGene?
TxDb annotation TxDb.Hsapiens.UCSC.hg38.knownGene
updated 4.8 years ago by 4.1k • written 4.8 years ago by ▴ 150
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804
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Answer: A: behaviour of regioneR permTest function
5.1 years ago bernatgel ▴ 150
0
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1
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3.4k
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Comment: C: How to add a color legend to plotKaryotype and kpPlotRegions ?
5.2 years ago bernatgel ▴ 150
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0
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3.4k
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Comment: C: How to add a color legend to plotKaryotype and kpPlotRegions ?
5.2 years ago bernatgel ▴ 150
3
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1
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3.4k
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Answer: A: How to add a color legend to plotKaryotype and kpPlotRegions ?
5.2 years ago bernatgel ▴ 150
0
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0
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1.0k
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Comment: C: Replacement error in PermTest
5.3 years ago bernatgel ▴ 150
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1
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1.0k
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Comment: C: Replacement error in PermTest
5.3 years ago bernatgel ▴ 150
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0
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1.0k
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Answer: A: Visualisation of ChIP-seq data in r - function errors in Gviz and biomaRt
5.3 years ago bernatgel ▴ 150
1
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0
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786
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Answer: A: regioneR meanInRegions to evaluate mutation accumulation
5.5 years ago bernatgel ▴ 150
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0
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763
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Answer: A: Is localZScore function of regioneR mask-aware?
5.5 years ago bernatgel ▴ 150
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0
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1.1k
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Answer: A: Bioconductor - Karyoploter | Visualization | Multiple Chromosome display issue
5.6 years ago bernatgel ▴ 150
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0
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605
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Answer: A: regioneR ignore the strand information when using the extendRegions() function
5.8 years ago bernatgel ▴ 150
1
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1
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2.2k
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Comment: C: permutation test on one set of data to get p-value of highest peaks. permTest?
6.6 years ago bernatgel ▴ 150
0
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0
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2.2k
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Comment: C: permutation test on one set of data to get p-value of highest peaks. permTest?
6.6 years ago bernatgel ▴ 150
1
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1
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2.2k
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Answer: A: permutation test on one set of data to get p-value of highest peaks. permTest?
6.6 years ago bernatgel ▴ 150
1
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0
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1.4k
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Answer: A: RegioneR perm test result Plot- how is y axis calculated
7.0 years ago bernatgel ▴ 150
0
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0
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2.1k
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Answer: A: How to name the custom genome in karyoploteR ?
7.0 years ago bernatgel ▴ 150
0
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0
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1.7k
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Answer: A: Circos Tile colors
7.5 years ago bernatgel ▴ 150
1
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1
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3.5k
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Comment: C: Error running the function permTest
7.6 years ago bernatgel ▴ 150
1
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1
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3.5k
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Answer: A: Error running the function permTest
7.6 years ago bernatgel ▴ 150
0
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0
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2.8k
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Answer: A: how to plot human genome chromosome Ideogram with each length by Gviz
7.7 years ago bernatgel ▴ 150
2
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0
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1.3k
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Answer: A: Conflicting results in 'overlapPermTest' function from regioneR package
7.8 years ago bernatgel ▴ 150
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0
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1.5k
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Comment: C: Sample code doesn't seem to be working on fresh install of regioneR
8.5 years ago bernatgel ▴ 150
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0
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1.1k
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Answer: A: width(GRanges) increases after randomizeRegions(..) in package RegioneR
8.8 years ago bernatgel ▴ 150
2
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0
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2.1k
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Answer: A: Retrieving Regions from hg38 of the same GC content and length with a list of el
9.0 years ago bernatgel ▴ 150
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