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1
vote
1
reply
9.4k
views
Answer:
A: Getting HGNC gene names from Ensembl transcript IDs (e.g., ENST0000...)
8.9 years ago
Johannes Rainer
★ 2.1k
0
votes
1
reply
1.3k
views
Comment:
C: Create a GmapGenome from a FaFile from AnnotationHub
8.9 years ago
Johannes Rainer
★ 2.1k
1
vote
4
replies
1.3k
views
Create a GmapGenome from a FaFile from AnnotationHub
gmapr
gmapgenome
annotationhub
fafile
updated 8.9 years ago by
Michael Lawrence
★ 11k • written 8.9 years ago by
Johannes Rainer
★ 2.1k
0
votes
0
replies
2.3k
views
Comment:
C: BSGenome::getSeq gives error: Error in NSBS(i, x, exact = exact, upperBoundIsStr
8.9 years ago
Johannes Rainer
★ 2.1k
1
vote
2
replies
1.8k
views
scanBam with ScanBamParam argument which specified ignores yieldSize. Intentionally?
scanbam
scanbamparam
rsamtools
updated 8.9 years ago by
Martin Morgan
25k • written 8.9 years ago by
Johannes Rainer
★ 2.1k
0
votes
0
replies
1.9k
views
Comment:
C: Problem fetching resources from AnnotationHub, error 403
8.9 years ago
Johannes Rainer
★ 2.1k
2
votes
8
replies
1.9k
views
Problem fetching resources from AnnotationHub, error 403
AnnotationHub
updated 8.9 years ago by
Valerie Obenchain
★ 6.8k • written 8.9 years ago by
Johannes Rainer
★ 2.1k
0
votes
1
reply
2.8k
views
Comment:
C: Plot data from VCF using Gviz?
8.9 years ago
Johannes Rainer
★ 2.1k
0
votes
0
replies
2.8k
views
Comment:
C: Plot data from VCF using Gviz?
8.9 years ago
Johannes Rainer
★ 2.1k
2
votes
5
replies
2.8k
views
Plot data from VCF using Gviz?
gviz
variantannotation
vcf
updated 8.9 years ago by
Valerie Obenchain
★ 6.8k • written 8.9 years ago by
Johannes Rainer
★ 2.1k
0
votes
0
replies
6.4k
views
Comment:
C: change the biomaRt host
8.9 years ago
Johannes Rainer
★ 2.1k
0
votes
5
replies
1.3k
views
Updated version of the mirbase.db package?
mirbase.db
updated 8.9 years ago by
simonas.juzenas
▴ 10 • written 9.6 years ago by
Johannes Rainer
★ 2.1k
4
votes
2
replies
5.6k
views
Answer:
A: BiomaRt workaround when Biomart server closed
8.9 years ago
Johannes Rainer
★ 2.1k
0
votes
1
reply
13k
views
Comment:
C: Problem with biomart's listMarts function
8.9 years ago
Johannes Rainer
★ 2.1k
5
votes
1
reply
5.8k
views
Answer:
A: biomaRt no longer works with proxy after upgrade
8.9 years ago
Johannes Rainer
★ 2.1k
1
vote
1
reply
1.6k
views
Answer:
A: biomaRt error when creating a mart object
8.9 years ago
Johannes Rainer
★ 2.1k
5
votes
1
reply
13k
views
Answer:
A: makeTxDbFromBiomart Error: 1: Space required after the Public Identifier
8.9 years ago
Johannes Rainer
★ 2.1k
4
votes
1
reply
13k
views
Answer:
A: Problem with biomart's listMarts function
8.9 years ago
Johannes Rainer
★ 2.1k
1
vote
0
replies
13k
views
Comment:
C: makeTxDbFromBiomart Error: 1: Space required after the Public Identifier
8.9 years ago
Johannes Rainer
★ 2.1k
0
votes
1
reply
1.9k
views
Comment:
C: Problem fetching resources from AnnotationHub, error 403
8.9 years ago
Johannes Rainer
★ 2.1k
0
votes
0
replies
1.9k
views
Comment:
C: Problem fetching resources from AnnotationHub, error 403
8.9 years ago
Johannes Rainer
★ 2.1k
0
votes
1
reply
1.9k
views
Comment:
C: Problem fetching resources from AnnotationHub, error 403
8.9 years ago
Johannes Rainer
★ 2.1k
1
vote
0
replies
6.6k
views
Comment:
C: annotating gene for transcript type/biotype
8.9 years ago
Johannes Rainer
★ 2.1k
2
votes
0
replies
6.6k
views
Answer:
A: annotating gene for transcript type/biotype
8.9 years ago
Johannes Rainer
★ 2.1k
0
votes
0
replies
2.6k
views
Answer:
A: biomaRt fails for M.musculus annotation, Ensembl version 80
9.1 years ago
Johannes Rainer
★ 2.1k
0
votes
0
replies
1.3k
views
Comment:
C: Conditional test for goseq?
9.2 years ago
Johannes Rainer
★ 2.1k
0
votes
2
replies
1.3k
views
Conditional test for goseq?
goseq
gostats
updated 9.2 years ago by
Gordon Smyth
51k • written 9.2 years ago by
Johannes Rainer
★ 2.1k
1
vote
0
replies
1.2k
views
Answer:
A: Using Ensmbl rel 80, when rel 79 is supported by BioConductor
9.2 years ago
Johannes Rainer
★ 2.1k
0
votes
0
replies
2.9k
views
Comment:
C: Ensembl release 81 is out!
9.2 years ago
Johannes Rainer
★ 2.1k
0
votes
0
replies
1.7k
views
Comment:
C: Extract specific contrast from paired multifactor design matrix
9.2 years ago
Johannes Rainer
★ 2.1k
0
votes
1
reply
1.7k
views
Comment:
C: Extract specific contrast from paired multifactor design matrix
9.2 years ago
Johannes Rainer
★ 2.1k
5
votes
5
replies
1.7k
views
Extract specific contrast from paired multifactor design matrix
edger
deseq2
rna-seq
updated 9.2 years ago by
James W. MacDonald
67k • written 9.2 years ago by
Johannes Rainer
★ 2.1k
0
votes
0
replies
1.5k
views
Answer:
A: get LCMS masses with more significant figures with xcmsRaw()
9.2 years ago
Johannes Rainer
★ 2.1k
0
votes
0
replies
2.4k
views
Comment:
C: Reading alignments above a mapq threshold from BAM files
9.2 years ago
Johannes Rainer
★ 2.1k
0
votes
1
reply
2.4k
views
Comment:
C: Reading alignments above a mapq threshold from BAM files
9.2 years ago
Johannes Rainer
★ 2.1k
0
votes
0
replies
1.8k
views
Answer:
A: summarizeOverlaps with mapq filter?
9.2 years ago
Johannes Rainer
★ 2.1k
0
votes
0
replies
2.4k
views
Comment:
C: Reading alignments above a mapq threshold from BAM files
9.2 years ago
Johannes Rainer
★ 2.1k
0
votes
0
replies
2.4k
views
Comment:
C: Reading alignments above a mapq threshold from BAM files
9.2 years ago
Johannes Rainer
★ 2.1k
5
votes
9
replies
2.4k
views
Reading alignments above a mapq threshold from BAM files
rsamtools
bam
updated 9.2 years ago by
Martin Morgan
25k • written 9.2 years ago by
Johannes Rainer
★ 2.1k
0
votes
0
replies
1.8k
views
Comment:
C: summarizeOverlaps with mapq filter?
9.3 years ago
Johannes Rainer
★ 2.1k
0
votes
0
replies
2.1k
views
Answer:
A: Graph viewer for Reactome Pathways
9.3 years ago
Johannes Rainer
★ 2.1k
0
votes
0
replies
2.6k
views
Answer:
A: Difference between methods getEIC and rawEIC for xcmsRaw classes
9.4 years ago
Johannes Rainer
★ 2.1k
0
votes
3
replies
2.6k
views
Difference between methods getEIC and rawEIC for xcmsRaw classes
xcms
metabolomics
9.4 years ago
Johannes Rainer
★ 2.1k
0
votes
0
replies
2.6k
views
Comment:
C: Difference between methods getEIC and rawEIC for xcmsRaw classes
9.4 years ago
Johannes Rainer
★ 2.1k
0
votes
0
replies
2.9k
views
Comment:
C: Unexpected total ion count (TIC) with xcms package
9.4 years ago
Johannes Rainer
★ 2.1k
0
votes
1
reply
2.9k
views
Comment:
C: Unexpected total ion count (TIC) with xcms package
9.4 years ago
Johannes Rainer
★ 2.1k
0
votes
1
reply
2.9k
views
Comment:
C: Unexpected total ion count (TIC) with xcms package
9.4 years ago
Johannes Rainer
★ 2.1k
0
votes
2
replies
2.9k
views
Comment:
C: Unexpected total ion count (TIC) with xcms package
9.4 years ago
Johannes Rainer
★ 2.1k
2
votes
9
replies
2.9k
views
Unexpected total ion count (TIC) with xcms package
xcms
metabolomics
updated 9.4 years ago by
Thomas Lin Pedersen
▴ 70 • written 9.4 years ago by
Johannes Rainer
★ 2.1k
1
vote
3
replies
1.4k
views
Unable to set colors in plotrt function in xcms package
xcms
bug
9.4 years ago
Johannes Rainer
★ 2.1k
340 results • Page
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