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Comment: C: How to use subSeq with DNAStringSet and information of GroupedIRanges?
7.7 years ago Gavin Kelly ▴ 690
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Job: Bioinformatics Position: Francis Crick Institute, London
job bioinformatics uk Job
7.8 years ago Gavin Kelly ▴ 690
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Answer: A: Multiple comparisons for DE analysis with DESeq2
7.8 years ago Gavin Kelly ▴ 690
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1.2k
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Answer: A: How to solve out the misunstanding of fake "red" "green" on the heatmap
7.8 years ago Gavin Kelly ▴ 690
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Comment: C: DESeq2 model design with unequal number of time points
7.9 years ago Gavin Kelly ▴ 690
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4.3k
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Comment: C: strange results from differential methylation analysis using limma
7.9 years ago Gavin Kelly ▴ 690
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Comment: C: DESEq2 Paired samples: Baseline Versus each Timepoint
7.9 years ago Gavin Kelly ▴ 690
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2.7k
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Comment: C: LIMMA paired analysis adjusting for two continuous variables - microarray data
7.9 years ago Gavin Kelly ▴ 690
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2.7k
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Answer: A: LIMMA paired analysis adjusting for two continuous variables - microarray data
7.9 years ago Gavin Kelly ▴ 690
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9.9k
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Answer: A: extracting the genes associated with the clusters
8.0 years ago Gavin Kelly ▴ 690
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1.4k
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Answer: A: Issues about experiment design
8.0 years ago Gavin Kelly ▴ 690
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3.4k
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Answer: A: Timecourse Differential expression with multiple factors
8.0 years ago Gavin Kelly ▴ 690
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1.0k
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Comment: C: Student at SJTU
8.0 years ago Gavin Kelly ▴ 690
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1.8k
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Comment: C: Question regarding best bioconductor package for RNA-seq
8.0 years ago Gavin Kelly ▴ 690
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1.8k
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Comment: C: Multi-factorial design for patient-replicates from different time points (Deseq2
8.0 years ago Gavin Kelly ▴ 690
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26k
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Comment: C: DESeq2 design confusion with three factors
8.0 years ago Gavin Kelly ▴ 690
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26k
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Answer: A: DESeq2 design confusion with three factors
8.0 years ago Gavin Kelly ▴ 690
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1.4k
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Comment: C: high number of DEGs detected using EBSeq-HMM *****UPDATED
8.0 years ago Gavin Kelly ▴ 690
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1.4k
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Comment: C: high number of DEGs detected using EBSeq-HMM *****UPDATED
8.0 years ago Gavin Kelly ▴ 690
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2.1k
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Answer: A: DESeq pvalue & padj
8.0 years ago Gavin Kelly ▴ 690
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5.8k
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Comment: C: DESeq2 log fold change estimates for factors with many levels
8.0 years ago Gavin Kelly ▴ 690
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5.8k
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Answer: A: DESeq2 log fold change estimates for factors with many levels
8.0 years ago Gavin Kelly ▴ 690
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2.1k
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Comment: C: Volcano plot non-numeric argument error
8.0 years ago Gavin Kelly ▴ 690
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2.1k
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Comment: C: Volcano plot non-numeric argument error
8.0 years ago Gavin Kelly ▴ 690
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1
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2.1k
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Comment: C: Volcano plot non-numeric argument error
8.0 years ago Gavin Kelly ▴ 690
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2.1k
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Comment: C: Volcano plot non-numeric argument error
8.0 years ago Gavin Kelly ▴ 690
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1.3k
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Comment: C: DESeq2 - differentially expressed genes for each sample
8.0 years ago Gavin Kelly ▴ 690
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2.3k
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Comment: C: DESeq2 with contaminating cell types
8.1 years ago Gavin Kelly ▴ 690
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1.1k
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Comment: C: DE by DEseq2
8.1 years ago Gavin Kelly ▴ 690
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1.1k
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Comment: C: DE by DEseq2
8.1 years ago Gavin Kelly ▴ 690
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2.3k
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Answer: A: DESeq2 with contaminating cell types
8.1 years ago Gavin Kelly ▴ 690
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1.1k
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Answer: A: DE by DEseq2
8.1 years ago Gavin Kelly ▴ 690
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2.2k
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Answer: A: DESeq2 analysis with a continuous covariate
8.1 years ago Gavin Kelly ▴ 690
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2.4k
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Answer: A: DESeq2: Multivariate Models and Model Statistic
8.1 years ago Gavin Kelly ▴ 690
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1.6k
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Answer: A: DESeq2 comparing interaction terms between multiple genotypes
8.1 years ago Gavin Kelly ▴ 690
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4.9k
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Comment: C: Any way to proceed duplicate removal for list of GRanges object ?
8.1 years ago Gavin Kelly ▴ 690
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3.8k
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Comment: C: Simultaneously adding two different covariates in the model gives error in DESeq
8.1 years ago Gavin Kelly ▴ 690
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3.0k
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Comment: C: GLM model on time course analysis and removing the outliers in Deseq2
8.1 years ago Gavin Kelly ▴ 690
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3.0k
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Comment: C: GLM model on time course analysis and removing the outliers
8.1 years ago Gavin Kelly ▴ 690
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3.3k
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Comment: C: DESEQ2: Can we analyse pair of technical replicates as biological replicates to
8.3 years ago Gavin Kelly ▴ 690
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1.1k
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Answer: A: Differential expression of one group agains all samples
8.4 years ago Gavin Kelly ▴ 690
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4.6k
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Answer: A: DESeq2 3-fatcor design and different interaction terms
8.5 years ago Gavin Kelly ▴ 690
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2.2k
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Comment: C: DESeq2: Shrinkage is inverting fold-changes
8.6 years ago Gavin Kelly ▴ 690
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2.2k
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DESeq2: Shrinkage is inverting fold-changes
deseq2 differential gene expression
updated 8.6 years ago by 43k • written 8.6 years ago by ▴ 690
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1.5k
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Answer: A: What is the correct contrast matrix if one treatment must be compared to both of
8.6 years ago Gavin Kelly ▴ 690
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1.6k
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Comment: C: Limma; design matrix for treatments and sibship
9.3 years ago Gavin Kelly ▴ 690
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1
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9.5k
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Comment: C: Confused in the usage of formula in DESeq or DESeq2
10.3 years ago Gavin Kelly ▴ 690
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