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Comment: C: How to compare the design formulas of DESeq2?
7.0 years ago Gavin Kelly ▴ 690
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Answer: A: should subgroups of comparisons be analyzed separately in Limma
7.0 years ago Gavin Kelly ▴ 690
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Comment: C: Running DESeq2 with gene-dependent binary variable such as membership in pathway
7.0 years ago Gavin Kelly ▴ 690
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6.4k
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Comment: C: lfcShrink and factors with multiple levels
7.0 years ago Gavin Kelly ▴ 690
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Answer: A: change plot title in DNAcopy multiple plot.type="s"
7.0 years ago Gavin Kelly ▴ 690
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Answer: A: Design model for DESeq2 analysis
7.0 years ago Gavin Kelly ▴ 690
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Comment: C: Design model for DESeq2 analysis
7.0 years ago Gavin Kelly ▴ 690
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DESeq2 'results' usability issue
deseq2
updated 7.1 years ago by 42k • written 7.1 years ago by ▴ 690
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4.7k
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Comment: C: DESEq2 for mulitple tissues under 2 conditions
7.1 years ago Gavin Kelly ▴ 690
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1.5k
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Answer: A: Loop for mass analyses and extraction of FCS data
7.1 years ago Gavin Kelly ▴ 690
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Answer: C: results(dds) error: couldn't find results. you should first run DESeq()
7.1 years ago Gavin Kelly ▴ 690
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974
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Answer: A: Is my design appropriate for contrast in DESeq2?
7.1 years ago Gavin Kelly ▴ 690
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2.1k
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Comment: C: SC3 gene clusters
7.1 years ago Gavin Kelly ▴ 690
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Comment: C: DEseq2: any problem with unbalanced number of sample in normal/tumor study?
7.1 years ago Gavin Kelly ▴ 690
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1.3k
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Comment: C: DeSeq2- design experiment
7.1 years ago Gavin Kelly ▴ 690
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2.1k
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Answer: A: What's the criteria used by DESeq2 to calculate log2 fold changes in time-course
7.1 years ago Gavin Kelly ▴ 690
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1.5k
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Answer: A: replicates and groups of samples: what's the right DESeq2 model?
7.1 years ago Gavin Kelly ▴ 690
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1.3k
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Comment: C: DeSeq2- design experiment
7.1 years ago Gavin Kelly ▴ 690
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1.2k
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Comment: C: 2 cells x 2 media x 2 conditions
7.1 years ago Gavin Kelly ▴ 690
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2.3k
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Comment: C: DESeq2 experimental design
7.1 years ago Gavin Kelly ▴ 690
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1.2k
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Answer: A: 2 cells x 2 media x 2 conditions
7.1 years ago Gavin Kelly ▴ 690
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1.5k
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Answer: A: Differential gene expression: common changes in response to treatment across cel
7.1 years ago Gavin Kelly ▴ 690
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2.1k
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Comment: C: Error when restore rownames of Feature data of ExpressionSet
7.1 years ago Gavin Kelly ▴ 690
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Comment: C: Error when restore rownames of Feature data of ExpressionSet
7.1 years ago Gavin Kelly ▴ 690
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2.1k
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Comment: C: Error when restore rownames of Feature data of ExpressionSet
7.1 years ago Gavin Kelly ▴ 690
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2.3k
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Answer: A: DESeq2 experimental design
7.1 years ago Gavin Kelly ▴ 690
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1
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4.2k
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Answer: A: DESeq2 contrast using list
7.1 years ago Gavin Kelly ▴ 690
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1
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2.5k
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Answer: A: Help to understand my contrast.matrix and to interpret my topTable results
7.2 years ago Gavin Kelly ▴ 690
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0
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3.1k
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Answer: A: ChIPseeker mapping between keys and columns
7.2 years ago Gavin Kelly ▴ 690
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1
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4.1k
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Comment: C: Time course analysis in DESeq2: handling common baseline for two experimental co
7.2 years ago Gavin Kelly ▴ 690
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22k
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Comment: C: Adjusting for covariates in paired sample design DESeq2
7.2 years ago Gavin Kelly ▴ 690
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3
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4.1k
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Answer: A: Time course analysis in DESeq2: handling common baseline for two experimental co
7.2 years ago Gavin Kelly ▴ 690
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Comment: C: Differential expression of nomalised and log2 transformed data in limma
7.2 years ago Gavin Kelly ▴ 690
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5.4k
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Comment: C: About the results and contrast (DESeq2)
7.2 years ago Gavin Kelly ▴ 690
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5.4k
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Answer: A: About the results and contrast (DESeq2)
7.2 years ago Gavin Kelly ▴ 690
2
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0
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1.5k
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Answer: A: DESeq2: Is it necessary to include all terms and interactions in LRT tests?
7.2 years ago Gavin Kelly ▴ 690
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4.3k
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Answer: A: deseq2 LRT vs Wald test results for DE expression among 4 conditions
7.2 years ago Gavin Kelly ▴ 690
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1.1k
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Answer: A: DESeq2 with 4 groups, 5 timepoints and more...!
7.2 years ago Gavin Kelly ▴ 690
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1.6k
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Answer: A: DESeq2 multifactorialdesign contrasts
7.3 years ago Gavin Kelly ▴ 690
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1.3k
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Answer: A: Difference between DESeq2 1.14 and 1.16
7.3 years ago Gavin Kelly ▴ 690
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1
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3.2k
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Answer: A: deseq2 complex time course data with out replicates
7.3 years ago Gavin Kelly ▴ 690
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0
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2.2k
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Answer: A: [DESeq2] time-course Experimental design
7.3 years ago Gavin Kelly ▴ 690
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1
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2.2k
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Answer: A: [DESeq2] time-course Experimental design
7.3 years ago Gavin Kelly ▴ 690
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1
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10k
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Comment: C: DESeq2 resultsNames(dds) not giving the right comparisons?.
7.3 years ago Gavin Kelly ▴ 690
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1
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10k
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Answer: A: DESeq2 resultsNames(dds) not giving the right comparisons...but results(dds, con
7.3 years ago Gavin Kelly ▴ 690
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1
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2.9k
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Answer: A: DESeq2 using interaction terms or grouping variable
7.3 years ago Gavin Kelly ▴ 690
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2.1k
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Comment: C: DESeq2 time series tissue specific differences over time
7.4 years ago Gavin Kelly ▴ 690
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1
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2.1k
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Answer: A: DESeq2 time series tissue specific differences over time
7.4 years ago Gavin Kelly ▴ 690
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1
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2.7k
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Comment: C: Inverse logFC on DESeq2 Rstudio
7.5 years ago Gavin Kelly ▴ 690
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0
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937
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Comment: C: DESeq2 on 2 genotypes versus 1 control
7.5 years ago Gavin Kelly ▴ 690
97 results • Page 1 of 2
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