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GDCdownload error on CentOS 6.10 server
TCGAbiolinks
5.6 years ago t.kuilman ▴ 170
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1.5k
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Comment: C: suppressing reduce() function when applying set operations to GRanges
10.1 years ago • updated 6.2 years ago t.kuilman ▴ 170
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1.5k
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Comment: C: suppressing reduce() function when applying set operations to GRanges
10.1 years ago • updated 6.2 years ago t.kuilman ▴ 170
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0
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1.1k
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Answer: A: CopywriteR - should regions with very low coverage result in -1073741823.5?
6.2 years ago t.kuilman ▴ 170
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2.2k
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Comment: C: One-sided p-value from DESeq2
6.2 years ago t.kuilman ▴ 170
2
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2
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2.2k
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One-sided p-value from DESeq2
DESeq2 nbinomWaldTest one-sided p-value
updated 6.3 years ago by 43k • written 6.3 years ago by ▴ 170
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1
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4.2k
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Comment: C: DESeq2: handling NA values in colData
updated 6.3 years ago by 43k • written 6.3 years ago by ▴ 170
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8
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4.2k
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DESeq2: handling NA values in colData
deseq2 coldata NA
updated 3 months ago by 43k • written 6.3 years ago by ▴ 170
1
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1
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2.2k
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Tutorial: Update gene symbols in GeneSetCollection
gseabase msigdb genesetcollection Tutorial
written 6.5 years ago by ▴ 170
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1
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1.5k
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Comment: C: DESeq2 design formula - correlation with ordered variable
6.5 years ago t.kuilman ▴ 170
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1
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1.5k
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Comment: C: DESeq2 design formula - correlation with ordered variable
6.5 years ago t.kuilman ▴ 170
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5
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1.5k
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DESeq2 design formula - correlation with ordered variable
DESeq2 design formula matrix
updated 6.5 years ago by 43k • written 6.5 years ago by ▴ 170
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0
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2.4k
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Comment: C: S4Vectors and subectHits error
6.6 years ago t.kuilman ▴ 170
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1
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2.4k
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Comment: C: S4Vectors and subectHits error
6.6 years ago t.kuilman ▴ 170
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1
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2.4k
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Comment: C: S4Vectors and subectHits error
6.6 years ago t.kuilman ▴ 170
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1
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2.4k
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Comment: C: S4Vectors and subectHits error
6.6 years ago t.kuilman ▴ 170
1
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1
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2.4k
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Comment: C: S4Vectors and subectHits error
6.6 years ago t.kuilman ▴ 170
1
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0
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2.4k
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Comment: C: S4Vectors and subectHits error
6.6 years ago t.kuilman ▴ 170
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0
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1.9k
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Answer: A: BiocParallel and CopywriteR Error
7.4 years ago t.kuilman ▴ 170
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1.3k
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Answer: A: Problems with CopywriteR
7.7 years ago t.kuilman ▴ 170
1
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0
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1.8k
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Pre-processing of RNA sequencing data for GSVA
rnaseq rna-seq preprocessing gsva
8.3 years ago t.kuilman ▴ 170
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1.8k
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Answer: A: CNV calling on normals samples / gaps in chromosomes
8.4 years ago t.kuilman ▴ 170
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1
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1.7k
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Comment: C: survcomp package - censor missing
8.5 years ago t.kuilman ▴ 170
3
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3
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1.7k
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survcomp package - censor missing
survcomp
updated 8.5 years ago by 4.1k • written 8.5 years ago by ▴ 170
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0
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1.6k
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Comment: C: CopywriteR can't finish calculating copy number
8.5 years ago t.kuilman ▴ 170
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1
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1.6k
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Answer: A: CopywriteR can't finish calculating copy number
8.5 years ago t.kuilman ▴ 170
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1.5k
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Comment: C: Error using countBam (Rsamtools package)
8.5 years ago t.kuilman ▴ 170
1
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4
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1.5k
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Error using countBam (Rsamtools package)
rsamtools countbam
8.5 years ago t.kuilman ▴ 170
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1
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1.5k
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Comment: C: Error using scanBam (Rsamtools package)
8.5 years ago t.kuilman ▴ 170
3
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1
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4.1k
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Answer: A: Preparing CopywriteR output for GISTIC 2.0 analysis
8.8 years ago t.kuilman ▴ 170
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0
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4.1k
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Comment: C: Preparing CopywriteR output for GISTIC 2.0 analysis
8.8 years ago t.kuilman ▴ 170
1
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1
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2.6k
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Comment: C: Visualizing CopywriteR's segmentation output in IGV
8.8 years ago t.kuilman ▴ 170
1
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1
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2.6k
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Answer: A: Visualizing CopywriteR's segmentation output in IGV
8.8 years ago t.kuilman ▴ 170
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1
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2.8k
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Comment: C: Calling amplifications and deletions from CopywriteR output
8.8 years ago t.kuilman ▴ 170
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2.2k
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Comment: C: Multithreading CopywriteR on SLURM cluster
8.8 years ago t.kuilman ▴ 170
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2.2k
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Comment: C: Multithreading CopywriteR on SLURM cluster
8.8 years ago t.kuilman ▴ 170
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2.2k
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Comment: C: Multithreading CopywriteR on SLURM cluster
8.8 years ago t.kuilman ▴ 170
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0
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2.2k
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Answer: A: Multithreading CopywriteR on SLURM cluster
8.8 years ago t.kuilman ▴ 170
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0
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2.8k
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Comment: C: Calling amplifications and deletions from CopywriteR output
8.8 years ago t.kuilman ▴ 170
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1
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2.8k
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Comment: C: Calling amplifications and deletions from CopywriteR output
8.8 years ago t.kuilman ▴ 170
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0
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1.5k
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Answer: A: Copywriter output looks strange
8.8 years ago t.kuilman ▴ 170
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0
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1.5k
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Answer: A: CopywriteR - choosing optimal bin size for targeted sequencing panel
8.8 years ago t.kuilman ▴ 170
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0
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2.8k
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Answer: A: Calling amplifications and deletions from CopywriteR output
8.8 years ago t.kuilman ▴ 170
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0
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1.7k
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Comment: C: DEXSeq error upon executing testForDEU()
8.8 years ago t.kuilman ▴ 170
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0
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1.7k
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Comment: C: DEXSeq error upon executing testForDEU()
8.9 years ago t.kuilman ▴ 170
2
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3
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1.7k
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DEXSeq error upon executing testForDEU()
dexseq
updated 8.9 years ago by ★ 1.9k • written 8.9 years ago by ▴ 170
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0
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1.6k
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Comment: C: Load balancing using BiocParallel
8.9 years ago t.kuilman ▴ 170
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1
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1.6k
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Comment: C: Load balancing using BiocParallel
8.9 years ago t.kuilman ▴ 170
4
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4
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1.6k
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Load balancing using BiocParallel
biocparallel
8.9 years ago t.kuilman ▴ 170
2
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0
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1.4k
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Answer: A: Copyhelper: Preprocession of mappability
8.9 years ago t.kuilman ▴ 170
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