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Comment: C: Align a list of DNA sequence, extract only positions with SNPs for conpact view?
4.2 years ago Vang Le ▴ 80
0
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3
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1.4k
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Align a list of DNA sequence, extract only positions with SNPs for conpact view?
msa Biostrings
updated 4.2 years ago by ▴ 290 • written 4.2 years ago by ▴ 80
2
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4
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1.1k
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Homo.sapiens package: Some genes are not found
homo.sapiens
5.9 years ago Vang Le ▴ 80
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0
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1.1k
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Comment: C: Homo.sapiens package: Some genes are not found
5.9 years ago Vang Le ▴ 80
0
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1
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1.1k
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Comment: C: Homo.sapiens package: Some genes are not found
5.9 years ago Vang Le ▴ 80
0
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0
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1.6k
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Comment: C: AnnotationHub, force update snapshot date?
6.0 years ago Vang Le ▴ 80
1
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2
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1.6k
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AnnotationHub, force update snapshot date?
annotationhub
updated 6.0 years ago by 3.9k • written 6.0 years ago by ▴ 80
0
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1
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752
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Comment: C: 'downstream' disappeared from GenomicRanges package?
6.0 years ago Vang Le ▴ 80
0
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3
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752
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'downstream' disappeared from GenomicRanges package?
genomicranges
6.0 years ago Vang Le ▴ 80
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0
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1.2k
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Job: Bioinformatician in Aalborg University Hospital, Denmark
bioinformatician job job Job
7.3 years ago Vang Le ▴ 80
0
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1
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839
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count coverage for exact matches to sequence pattern
genomicfeatures rsamtools
updated 7.5 years ago by ★ 11k • written 7.5 years ago by ▴ 80
0
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1
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9.6k
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Comment: C: resize (shrink/expand) GenomicRanges
7.5 years ago Vang Le ▴ 80
2
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1
reply
4.1k
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extract chromosomes and read-starts from a BAM file to a data.frame?
bam rsamtools samtools genomicalignments
updated 8.2 years ago by 25k • written 8.2 years ago by ▴ 80
0
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2
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2.9k
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rtracklayer /GRange object to BED format?
granges rtracklayer
updated 8.4 years ago by ★ 11k • written 8.4 years ago by ▴ 80
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0
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2.9k
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Answer: A: rtracklayer /GRange object to BED format?
8.4 years ago Vang Le ▴ 80
0
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0
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1.4k
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count overlapping reads for CpG islands and annotate with gene names?
annotation chippeakanno rattus norvegicus medip-seq
8.4 years ago Vang Le ▴ 80
0
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0
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1.3k
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Comment: C: edgeR, very big lib.size makes CPM very small
9.9 years ago Vang Le ▴ 80
0
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2
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1.3k
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edgeR, very big lib.size makes CPM very small
updated 9.9 years ago by 51k • written 9.9 years ago by ▴ 80
0
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0
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308
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Comment: C: edgeR: Analyze mini-time-series MeDIP data of pooled DNAs without replicates
9.9 years ago Vang Le ▴ 80
0
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1
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308
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Comment: C: edgeR: Analyze mini-time-series MeDIP data of pooled DNAs without replicates
9.9 years ago Vang Le ▴ 80
0
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1
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308
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Answer: A: edgeR: Analyze mini-time-series MeDIP data of pooled DNAs without replicates
9.9 years ago Vang Le ▴ 80
0
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0
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10k
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Answer: A: deseq2: convert ensembl ID to gene symbol.
9.9 years ago Vang Le ▴ 80
0
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1
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1.9k
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edgeR: Analyze mini-time-series MeDIP data of pooled DNAs without replicates?
Sequencing edgeR MEDIPS Sequencing edgeR MEDIPS
9.9 years ago Vang Le ▴ 80
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