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25
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ReactomeGSA for RNASeq
ReactomeGSA BatchEffect RNASeqData
18 hours ago Shaimaa Gamal • 0
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1
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304
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Comment: Comment: Log-cpm values from limma
7 days ago Shaimaa Gamal • 0
5
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3
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304
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Log-cpm values from limma
limma edgeR RNASeq
updated 7 days ago by 50k • written 28 days ago by • 0
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1
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277
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Comment: Comment: Lib sizes in the DGE object are different from original lib sizes
5 weeks ago Shaimaa Gamal • 0
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3
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277
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Lib sizes in the DGE object are different from original lib sizes
edgeR DifferentialExpression
updated 5 weeks ago by 65k • written 5 weeks ago by • 0
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7.4k
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Comment: Comment: Normalised counts from RUVg in RUVSeq
8 weeks ago Shaimaa Gamal • 0
2
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1
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318
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Normalization factors when there is a possible unidirectional expression
limma Normalization DifferentialExpression
updated 3 months ago by ★ 4.1k • written 3 months ago by • 0
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315
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Comment: Comment: Design matrix after RUVg correction
3 months ago Shaimaa Gamal • 0
3
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2
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315
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Design matrix after RUVg correction
RUVSeq limma DifferentialExpression
3 months ago Shaimaa Gamal • 0
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1
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375
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Comment: Comment: voom with quality weights after RUV correction
3 months ago Shaimaa Gamal • 0
4
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3
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375
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voom with quality weights after RUV correction
RUVSeq limma DifferentialExpression
updated 3 months ago by 50k • written 3 months ago by • 0
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1
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385
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Comment: Comment: TMM normalization after RUVg correction
3 months ago Shaimaa Gamal • 0
2
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3
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385
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TMM normalization after RUVg correction
RUVSeq limma DifferentialExpression edgeR Normalization
updated 3 months ago by 65k • written 3 months ago by • 0
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2
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320
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PCA after DESeq2
DESeq2 PrincipalComponent prin DifferentialExpression
updated 3 months ago by 42k • written 3 months ago by • 0
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0
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320
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Comment: Comment: PCA after DESeq2
3 months ago Shaimaa Gamal • 0
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0
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596
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Comment: Comment: Monotonic genes in results of differential gene expression analysis
3 months ago Shaimaa Gamal • 0
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1
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596
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Comment: Comment: Monotonic genes in results of differential gene expression analysis
3 months ago Shaimaa Gamal • 0
0
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1
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596
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Comment: Comment: Monotonic genes in results of differential gene expression analysis
3 months ago Shaimaa Gamal • 0
5
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6
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596
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Monotonic genes in results of differential gene expression analysis
DifferentialExpression rnaseqGene RNASeqData
3 months ago Shaimaa Gamal • 0
0
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1
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7.4k
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Comment: Comment: Normalised counts from RUVg in RUVSeq
updated 4 months ago by 65k • written 4 months ago by • 0
0
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0
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636
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Comment: Comment: filtering lowly expressed reads
4 months ago Shaimaa Gamal • 0
0
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1
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636
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Comment: Comment: filtering lowly expressed reads
4 months ago Shaimaa Gamal • 0
4
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6
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636
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filtering lowly expressed reads
RNASeq limma DifferentialExpression Preprocessing
updated 3 months ago by 50k • written 4 months ago by • 0
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0
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10k
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Comment: Comment: threshold to filter lowly expressed genes
4 months ago Shaimaa Gamal • 0
0
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0
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636
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Comment: Comment: filtering lowly expressed reads
4 months ago Shaimaa Gamal • 0
3
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1
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324
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Dataset imbalance
RNASeq DifferentialExpression RnaSeqSampleSizeData RnaSeqSampleSize
updated 4 months ago by 50k • written 4 months ago by • 0
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1.2k
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Comment: Comment: DESeq2: DE Analysis with very imbalanced samples per condition
4 months ago Shaimaa Gamal • 0
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0
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1.5k
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Comment: Comment: Can the limma package be applied to Log2 RUV-normalized data?
5 months ago Shaimaa Gamal • 0
0
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1
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1.5k
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Comment: Comment: Can the limma package be applied to Log2 RUV-normalized data?
5 months ago Shaimaa Gamal • 0
0
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1
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7.4k
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Comment: Comment: Normalised counts from RUVg in RUVSeq
5 months ago Shaimaa Gamal • 0
0
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2
replies
583
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RNA seq differential expression analysis
DEGseq RNASeqData limma
updated 11 months ago by 50k • written 11 months ago by • 0
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