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694
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Differential expression analysis using two TCGA datasets
DifferentialExpression TCGAbiolinks RNASeq
updated 6 days ago by ★ 4.8k • written 7 days ago by • 0
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2
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511
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ReactomeGSA adjustment for confounding variables
BiologicalQuestion ReactomeGSA BatchEffect
written 7 months ago by • 0
0
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1
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477
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ReactomeGSA for RNASeq
ReactomeGSA BatchEffect RNASeqData
updated 7 months ago by ▴ 20 • written 11 months ago by • 0
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1
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1.2k
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Comment: Comment: Log-cpm values from limma
11 months ago Shaimaa Gamal • 0
5
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3
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1.2k
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Log-cpm values from limma
limma edgeR RNASeq
updated 11 months ago by 52k • written 12 months ago by • 0
0
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1
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668
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Comment: Comment: Lib sizes in the DGE object are different from original lib sizes
12 months ago Shaimaa Gamal • 0
1
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3
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668
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Lib sizes in the DGE object are different from original lib sizes
edgeR DifferentialExpression
updated 12 months ago by 68k • written 12 months ago by • 0
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0
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8.6k
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Comment: Comment: Normalised counts from RUVg in RUVSeq
13 months ago Shaimaa Gamal • 0
2
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1
reply
612
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Normalization factors when there is a possible unidirectional expression
limma Normalization DifferentialExpression
updated 14 months ago by ★ 4.8k • written 14 months ago by • 0
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0
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717
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Comment: Comment: Design matrix after RUVg correction
14 months ago Shaimaa Gamal • 0
3
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2
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717
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Design matrix after RUVg correction
RUVSeq limma DifferentialExpression
14 months ago Shaimaa Gamal • 0
0
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1
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895
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Comment: Comment: voom with quality weights after RUV correction
14 months ago Shaimaa Gamal • 0
4
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3
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895
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voom with quality weights after RUV correction
RUVSeq limma DifferentialExpression
updated 14 months ago by 52k • written 14 months ago by • 0
0
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1
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833
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Comment: Comment: TMM normalization after RUVg correction
14 months ago Shaimaa Gamal • 0
2
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3
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833
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TMM normalization after RUVg correction
RUVSeq limma DifferentialExpression edgeR Normalization
updated 14 months ago by 68k • written 14 months ago by • 0
0
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2
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641
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PCA after DESeq2
DESeq2 PrincipalComponent prin DifferentialExpression
updated 14 months ago by 43k • written 14 months ago by • 0
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0
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641
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Comment: Comment: PCA after DESeq2
14 months ago Shaimaa Gamal • 0
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0
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1.2k
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Comment: Comment: Monotonic genes in results of differential gene expression analysis
15 months ago Shaimaa Gamal • 0
0
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1
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1.2k
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Comment: Comment: Monotonic genes in results of differential gene expression analysis
15 months ago Shaimaa Gamal • 0
0
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1
reply
1.2k
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Comment: Comment: Monotonic genes in results of differential gene expression analysis
15 months ago Shaimaa Gamal • 0
5
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6
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1.2k
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Monotonic genes in results of differential gene expression analysis
DifferentialExpression rnaseqGene RNASeqData
15 months ago Shaimaa Gamal • 0
0
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1
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8.6k
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Comment: Comment: Normalised counts from RUVg in RUVSeq
updated 15 months ago by 68k • written 15 months ago by • 0
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0
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1.3k
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Comment: Comment: filtering lowly expressed reads
15 months ago Shaimaa Gamal • 0
0
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1
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1.3k
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Comment: Comment: filtering lowly expressed reads
15 months ago Shaimaa Gamal • 0
4
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6
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1.3k
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filtering lowly expressed reads
RNASeq limma DifferentialExpression Preprocessing
updated 14 months ago by 52k • written 15 months ago by • 0
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0
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12k
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Comment: Comment: threshold to filter lowly expressed genes
15 months ago Shaimaa Gamal • 0
0
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0
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1.3k
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Comment: Comment: filtering lowly expressed reads
15 months ago Shaimaa Gamal • 0
3
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1
reply
682
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Dataset imbalance
RNASeq DifferentialExpression RnaSeqSampleSizeData RnaSeqSampleSize
updated 15 months ago by 52k • written 15 months ago by • 0
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0
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1.7k
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Comment: Comment: DESeq2: DE Analysis with very imbalanced samples per condition
15 months ago Shaimaa Gamal • 0
0
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0
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2.6k
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Comment: Comment: Can the limma package be applied to Log2 RUV-normalized data?
16 months ago Shaimaa Gamal • 0
0
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1
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2.6k
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Comment: Comment: Can the limma package be applied to Log2 RUV-normalized data?
16 months ago Shaimaa Gamal • 0
0
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1
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8.6k
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Comment: Comment: Normalised counts from RUVg in RUVSeq
16 months ago Shaimaa Gamal • 0
0
votes
2
replies
829
views
RNA seq differential expression analysis
DEGseq RNASeqData limma
updated 22 months ago by 52k • written 22 months ago by • 0
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