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526
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Batch correction in deseq2
DESeq2
updated 2.3 years ago by ★ 1.4k • written 2.3 years ago by ▴ 40
0
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1
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816
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using deseq2 for intronic counts for 2 conditins with replicates
deseq2 intron differential expression
updated 4.7 years ago by 42k • written 4.7 years ago by ▴ 40
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1
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2.7k
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Comment: C: extract TCGA barcodes and sample_type information from uuids
4.8 years ago gv ▴ 40
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4
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2.7k
views
extract TCGA barcodes and sample_type information from uuids
GenomicDataCommons R
updated 3.3 years ago by ▴ 50 • written 4.8 years ago by ▴ 40
3
votes
1
reply
839
views
logFC in limma
limma logFC
updated 4.9 years ago by 67k • written 4.9 years ago by ▴ 40
1
vote
1
reply
974
views
model matrix in limma
limma R
updated 4.9 years ago by 51k • written 4.9 years ago by ▴ 40
0
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1
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2.0k
views
Comment: C: Comparing factor levels in deseq2
5.0 years ago gv ▴ 40
0
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3
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2.0k
views
Comparing factor levels in deseq2
deseq2
5.0 years ago gv ▴ 40
0
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1
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1.2k
views
Comment: C: null model and DEXSeqDataSet object in DEXSEQ
5.6 years ago gv ▴ 40
2
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3
replies
1.2k
views
null model and DEXSeqDataSet object in DEXSEQ
deseq2 dexseq
5.6 years ago gv ▴ 40
0
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2
replies
1.5k
views
Comment: C: estimateDispersions calculation for > 500,000 exons for 2 conditions taking fore
5.6 years ago gv ▴ 40
2
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6
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1.5k
views
estimateDispersions calculation for > 500,000 exons for 2 conditions taking forever
deseq2 dexseq
5.6 years ago gv ▴ 40
0
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1
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1.5k
views
Comment: C: estimateDispersions calculation for > 500,000 exons for 2 conditions taking fore
5.6 years ago gv ▴ 40
0
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1
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25k
views
Comment: C: plotMA in deseq2
updated 6.1 years ago by 42k • written 6.1 years ago by ▴ 40
0
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3
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25k
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plotMA in deseq2
deseq2
updated 6.1 years ago by 42k • written 6.1 years ago by ▴ 40
0
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1
reply
2.6k
views
Plotting coverage from bam files
bam plot
updated 6.6 years ago by 67k • written 6.6 years ago by ▴ 40
0
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1
reply
1.2k
views
pca plot for tissues and protein values
pca
updated 7.5 years ago by 67k • written 7.5 years ago by ▴ 40
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0
replies
830
views
DEXSeq : for differential exon usage
DEXSeq R
7.5 years ago gv ▴ 40
0
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1
reply
2.7k
views
Making a gff file for introns to be used with DEXSEQ
dexseq
updated 7.7 years ago by 16k • written 7.7 years ago by ▴ 40
0
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1
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3.0k
views
Comment: C: deseq2 estimating size factors
8.6 years ago gv ▴ 40
6
votes
4
replies
3.0k
views
deseq2 estimating size factors
r deseq2
updated 8.6 years ago by 42k • written 8.6 years ago by ▴ 40
1
vote
3
replies
1.9k
views
Microarray data analysis for detecting alternative splicing
microarray splicing
updated 8.8 years ago by ▴ 20 • written 10.1 years ago by ▴ 40
0
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1
reply
3.0k
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Comment: C: DESeq2 rna seq analysis
9.4 years ago gv ▴ 40
0
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1
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3.0k
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Comment: C: DESeq2 rna seq analysis
9.4 years ago gv ▴ 40
0
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1
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3.0k
views
Comment: C: DESeq2 rna seq analysis
9.4 years ago gv ▴ 40
1
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6
replies
3.0k
views
DESeq2 rna seq analysis
deseq2
updated 9.4 years ago by ★ 13k • written 9.4 years ago by ▴ 40
0
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0
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2.3k
views
unable to find an inherited method for function ‘Rle’ for signature ‘"NULL", "missing"
r
9.5 years ago gv ▴ 40
1
vote
3
replies
2.7k
views
ddCt calculation using bioconductor package
ddct qPCR
updated 3.5 years ago by ▴ 60 • written 9.7 years ago by ▴ 40
0
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1
reply
3.4k
views
read.celfiles error
updated 10.3 years ago by 67k • written 10.3 years ago by ▴ 40
0
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0
replies
1.5k
views
Plotting per base coverage from genomecoveragebed utility
graph graph
10.6 years ago gv ▴ 40
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