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442
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Batch correction in deseq2
DESeq2
updated 22 months ago by ★ 1.4k • written 22 months ago by ▴ 40
0
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1
reply
711
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using deseq2 for intronic counts for 2 conditins with replicates
deseq2 intron differential expression
updated 4.3 years ago by 42k • written 4.3 years ago by ▴ 40
0
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1
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2.4k
views
Comment: C: extract TCGA barcodes and sample_type information from uuids
4.4 years ago gv ▴ 40
0
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4
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2.4k
views
extract TCGA barcodes and sample_type information from uuids
GenomicDataCommons R
updated 2.9 years ago by ▴ 50 • written 4.4 years ago by ▴ 40
3
votes
1
reply
718
views
logFC in limma
limma logFC
updated 4.5 years ago by 66k • written 4.5 years ago by ▴ 40
1
vote
1
reply
904
views
model matrix in limma
limma R
updated 4.6 years ago by 51k • written 4.6 years ago by ▴ 40
0
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1
reply
1.8k
views
Comment: C: Comparing factor levels in deseq2
4.6 years ago gv ▴ 40
0
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3
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1.8k
views
Comparing factor levels in deseq2
deseq2
4.6 years ago gv ▴ 40
0
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1
reply
1.1k
views
Comment: C: null model and DEXSeqDataSet object in DEXSEQ
5.2 years ago gv ▴ 40
2
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3
replies
1.1k
views
null model and DEXSeqDataSet object in DEXSEQ
deseq2 dexseq
5.2 years ago gv ▴ 40
0
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2
replies
1.3k
views
Comment: C: estimateDispersions calculation for > 500,000 exons for 2 conditions taking fore
5.2 years ago gv ▴ 40
2
votes
6
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1.3k
views
estimateDispersions calculation for > 500,000 exons for 2 conditions taking forever
deseq2 dexseq
5.2 years ago gv ▴ 40
0
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1
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1.3k
views
Comment: C: estimateDispersions calculation for > 500,000 exons for 2 conditions taking fore
5.2 years ago gv ▴ 40
0
votes
1
reply
24k
views
Comment: C: plotMA in deseq2
updated 5.7 years ago by 42k • written 5.7 years ago by ▴ 40
0
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3
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24k
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plotMA in deseq2
deseq2
updated 5.7 years ago by 42k • written 5.7 years ago by ▴ 40
0
votes
1
reply
2.2k
views
Plotting coverage from bam files
bam plot
updated 6.2 years ago by 66k • written 6.2 years ago by ▴ 40
0
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1
reply
1.1k
views
pca plot for tissues and protein values
pca
updated 7.1 years ago by 66k • written 7.1 years ago by ▴ 40
0
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0
replies
764
views
DEXSeq : for differential exon usage
DEXSeq R
7.2 years ago gv ▴ 40
0
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1
reply
2.5k
views
Making a gff file for introns to be used with DEXSEQ
dexseq
updated 7.3 years ago by 16k • written 7.3 years ago by ▴ 40
0
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1
reply
2.8k
views
Comment: C: deseq2 estimating size factors
8.2 years ago gv ▴ 40
6
votes
4
replies
2.8k
views
deseq2 estimating size factors
r deseq2
updated 8.2 years ago by 42k • written 8.2 years ago by ▴ 40
1
vote
3
replies
1.8k
views
Microarray data analysis for detecting alternative splicing
microarray splicing
updated 8.4 years ago by ▴ 20 • written 9.7 years ago by ▴ 40
0
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1
reply
2.8k
views
Comment: C: DESeq2 rna seq analysis
9.1 years ago gv ▴ 40
0
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1
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2.8k
views
Comment: C: DESeq2 rna seq analysis
9.1 years ago gv ▴ 40
0
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1
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2.8k
views
Comment: C: DESeq2 rna seq analysis
9.1 years ago gv ▴ 40
1
vote
6
replies
2.8k
views
DESeq2 rna seq analysis
deseq2
updated 9.1 years ago by ★ 13k • written 9.1 years ago by ▴ 40
0
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0
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2.2k
views
unable to find an inherited method for function ‘Rle’ for signature ‘"NULL", "missing"
r
9.1 years ago gv ▴ 40
1
vote
3
replies
2.5k
views
ddCt calculation using bioconductor package
ddct qPCR
updated 3.1 years ago by ▴ 60 • written 9.3 years ago by ▴ 40
0
votes
1
reply
3.3k
views
read.celfiles error
updated 10.0 years ago by 66k • written 10.0 years ago by ▴ 40
0
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0
replies
1.4k
views
Plotting per base coverage from genomecoveragebed utility
graph graph
10.2 years ago gv ▴ 40
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