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Answer: A: Filter low counts OTUs from a MRfull table to prepare a heatmap
6.8 years ago Joseph Nathaniel Paulson ▴ 280
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Answer: A: Including taxa names in heatmap in metagenomeseq
6.8 years ago Joseph Nathaniel Paulson ▴ 280
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Answer: A: Should I normalize communities separately with metagenomeseq?
7.0 years ago Joseph Nathaniel Paulson ▴ 280
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Answer: A: Where to find open access microbiome data for case-control comparative study?
7.6 years ago Joseph Nathaniel Paulson ▴ 280
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Comment: C: Difference between fitFeatureModel and fitZIG in metagenomeSeq
7.6 years ago Joseph Nathaniel Paulson ▴ 280
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Comment: C: Difference between fitFeatureModel and fitZIG in metagenomeSeq
7.7 years ago Joseph Nathaniel Paulson ▴ 280
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Answer: A: metagenomeSeq: role for fitLogNormal?
7.7 years ago Joseph Nathaniel Paulson ▴ 280
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Answer: A: Difference between fitFeatureModel and fitZIG in metagenomeSeq
7.7 years ago Joseph Nathaniel Paulson ▴ 280
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Answer: A: metagenomeSeq 1.16.0: unique features give NA's for logFC / p-val?
7.7 years ago Joseph Nathaniel Paulson ▴ 280
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Comment: C: metagenomeSeq log transformation
7.8 years ago Joseph Nathaniel Paulson ▴ 280
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Comment: C: metagenomeSeq log transformation
7.8 years ago Joseph Nathaniel Paulson ▴ 280
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Answer: A: metagenomeSeq log transformation
7.8 years ago Joseph Nathaniel Paulson ▴ 280
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Answer: A: MetagenomeSeq: Sorting by sample type in plotMRheatmap
7.9 years ago Joseph Nathaniel Paulson ▴ 280
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Answer: A: metagenomeSeq: cumNormStat normalization default
8.0 years ago Joseph Nathaniel Paulson ▴ 280
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Answer: A: error using fitTimeSeries in metagenomeSeq
8.1 years ago Joseph Nathaniel Paulson ▴ 280
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Answer: A: error using fitTimeSeries in metagenomeSeq
8.1 years ago Joseph Nathaniel Paulson ▴ 280
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Answer: A: Understand fold changes
8.1 years ago Joseph Nathaniel Paulson ▴ 280
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Comment: C: paired analysis using metagenomeSeq
8.2 years ago Joseph Nathaniel Paulson ▴ 280
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2.8k
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Answer: A: paired analysis using metagenomeSeq
8.2 years ago Joseph Nathaniel Paulson ▴ 280
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3.8k
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Answer: A: DESeq2 16s microbiome size factors
8.2 years ago Joseph Nathaniel Paulson ▴ 280
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Comment: C: New Bioconductor Meetup Group in Boston -- first meeting September 6 2016
8.3 years ago Joseph Nathaniel Paulson ▴ 280
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News: New Bioconductor Meetup Group in Boston -- first meeting September 6 2016
meetup bioconductor boston longwood News
8.3 years ago Joseph Nathaniel Paulson ▴ 280
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Answer: A: Metagenome seq errors using biom (1.3) file
8.3 years ago Joseph Nathaniel Paulson ▴ 280
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1.1k
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Answer: A: fitTimeSeries possible error
8.3 years ago Joseph Nathaniel Paulson ▴ 280
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Answer: A: metagenomeSeq for continuous phenotype
8.4 years ago Joseph Nathaniel Paulson ▴ 280
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Answer: A: Analyzing microbiome data (many zero-counts) using DESeq2
8.4 years ago Joseph Nathaniel Paulson ▴ 280
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Answer: A: fitZig coefficient for interaction terms?
8.5 years ago Joseph Nathaniel Paulson ▴ 280
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1.2k
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Answer: A: Aggregate By Taxonomy Error
8.5 years ago Joseph Nathaniel Paulson ▴ 280
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Comment: C: MetagenomSeq, perform anova or kruskall wallis with three groups ?
8.5 years ago Joseph Nathaniel Paulson ▴ 280
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Comment: C: MetagenomSeq, perform anova or kruskall wallis with three groups ?
8.5 years ago Joseph Nathaniel Paulson ▴ 280
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1.9k
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Answer: A: Normalisation problem in metagenomeSeq
8.6 years ago Joseph Nathaniel Paulson ▴ 280
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Answer: A: Multiple variables in fitFeaturemodel
8.7 years ago Joseph Nathaniel Paulson ▴ 280
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1
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2.8k
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Comment: C: Interpretation for MRfulltable of fitzig in Metagenomeseq
8.8 years ago Joseph Nathaniel Paulson ▴ 280
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2.8k
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Answer: A: Interpretation for MRfulltable of fitzig in Metagenomeseq
8.8 years ago Joseph Nathaniel Paulson ▴ 280
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Comment: C: Interpretation for MRfulltable of fitzig in Metagenomeseq
updated 8.8 years ago by 25k • written 8.8 years ago by ▴ 280
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Answer: A: Random effects metagenomeSeq
8.8 years ago Joseph Nathaniel Paulson ▴ 280
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3.5k
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Comment: C: Alpha diversity on Rlogtransformed data
8.9 years ago Joseph Nathaniel Paulson ▴ 280
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1.3k
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Answer: A: metagenomeSeq - normFactors
9.0 years ago Joseph Nathaniel Paulson ▴ 280
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2.2k
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Comment: C: metagenomeSeq cumNorm issue with NAs in real data
9.3 years ago Joseph Nathaniel Paulson ▴ 280
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1.9k
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Answer: A: creating a subsetted MRexperiment based on sample name?
9.3 years ago Joseph Nathaniel Paulson ▴ 280
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1.9k
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Answer: A: creating a subsetted MRexperiment based on sample name?
9.3 years ago Joseph Nathaniel Paulson ▴ 280
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Comment: C: edgeR for metagenomic data
9.4 years ago Joseph Nathaniel Paulson ▴ 280
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1.7k
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Comment: C: MetagenomeSeq sparsefeature question
9.4 years ago Joseph Nathaniel Paulson ▴ 280
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3.7k
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Answer: A: edgeR for metagenomic data
9.4 years ago Joseph Nathaniel Paulson ▴ 280
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Answer: A: metagenomeSeq cumNorm issue with NAs in real data
9.6 years ago Joseph Nathaniel Paulson ▴ 280
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2
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2.2k
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Comment: C: metagenomeSeq cumNorm issue with NAs in real data
9.6 years ago Joseph Nathaniel Paulson ▴ 280
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2.2k
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Answer: A: metagenomeSeq cumNorm issue with NAs in real data
9.6 years ago Joseph Nathaniel Paulson ▴ 280
1
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2.1k
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Answer: A: Normalization factors in metagenomeSeq
9.6 years ago Joseph Nathaniel Paulson ▴ 280
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1.3k
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Answer: A: Metagenomeseq package; time series analysis
9.7 years ago Joseph Nathaniel Paulson ▴ 280
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1.6k
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Answer: A: Omission of final edge in correlationTest
9.8 years ago Joseph Nathaniel Paulson ▴ 280
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