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0
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0
replies
1.3k
views
Answer:
Answer: DiffBind dropping peaks in ATAC-seq data
15 months ago
Malcolm Cook
★ 1.6k
0
votes
0
replies
1.5k
views
Answer:
Answer: GenomicRanges method to make the total width of ranges a certain value?
2.0 years ago
Malcolm Cook
★ 1.6k
0
votes
0
replies
6.6k
views
Answer:
Answer: Any tools to convert .gff to .gtf format
2.2 years ago
Malcolm Cook
★ 1.6k
0
votes
0
replies
4.3k
views
Comment:
Comment: LFQ shiny app from DEP package reports: Error: 'imputeMethods' is not an exporte
2.3 years ago
Malcolm Cook
★ 1.6k
0
votes
0
replies
1.8k
views
Answer:
Answer: Error in trying to use Interactive analysis using the DEP Shiny apps (LFQ app)
2.3 years ago
Malcolm Cook
★ 1.6k
0
votes
0
replies
1.3k
views
Answer:
Answer: bioMart Sscrofa_gene_ensembl getBM() paralogues ERROR
2.4 years ago
Malcolm Cook
★ 1.6k
2
votes
2
replies
2.3k
views
Answer:
Answer: Combine GRanges(List) to a single GRanges with unified breakpoints
2.4 years ago
Malcolm Cook
★ 1.6k
4
votes
0
replies
1.5k
views
Answer:
Answer: strand-aware GRanges shift
2.8 years ago
Malcolm Cook
★ 1.6k
0
votes
0
replies
1.7k
views
Comment:
Comment: Gviz and datatracks
2.8 years ago
Malcolm Cook
★ 1.6k
0
votes
1
reply
3.9k
views
Answer:
Answer: Subset GRanges by intersection
2.8 years ago
Malcolm Cook
★ 1.6k
0
votes
0
replies
1.8k
views
Answer:
Answer: annotateWithGeneParts
3.5 years ago
Malcolm Cook
★ 1.6k
2
votes
0
replies
1.1k
views
Answer:
Answer: Produce quantile normalized expression values for use with BatchQC
3.7 years ago
Malcolm Cook
★ 1.6k
0
votes
0
replies
2.4k
views
Comment:
C: Limma analysis with multiple variables
4.4 years ago
Malcolm Cook
★ 1.6k
0
votes
0
replies
1.9k
views
Comment:
C: GenomicRanges object no longer viewable
4.4 years ago
Malcolm Cook
★ 1.6k
0
votes
0
replies
1.9k
views
Comment:
C: GenomicRanges object no longer viewable
4.4 years ago
Malcolm Cook
★ 1.6k
0
votes
1
reply
1.9k
views
Comment:
C: GenomicRanges object no longer viewable
4.4 years ago
Malcolm Cook
★ 1.6k
0
votes
0
replies
752
views
Comment:
C: RSS for new packages unavailable?
4.9 years ago
Malcolm Cook
★ 1.6k
3
votes
3
replies
752
views
RSS for new packages unavailable?
RSS
4.9 years ago
Malcolm Cook
★ 1.6k
2
votes
0
replies
2.2k
views
Answer:
A: Filtering GFF3 file
5.2 years ago
Malcolm Cook
★ 1.6k
0
votes
0
replies
2.5k
views
Comment:
C: Yeast org.Sc.sgd.db lacks SYMBOL - should it have one? - how to make it interope
5.7 years ago
Malcolm Cook
★ 1.6k
0
votes
5
replies
2.5k
views
Yeast org.Sc.sgd.db lacks SYMBOL - should it have one? - how to make it interoperate with clusterProfiler in its absence?
annotation
go
clusterProfiler
org.Sc.sgd.db
5.7 years ago
Malcolm Cook
★ 1.6k
0
votes
0
replies
2.5k
views
Answer:
A: Yeast org.Sc.sgd.db lacks SYMBOL - should it have one? - how to make it interope
5.7 years ago
Malcolm Cook
★ 1.6k
0
votes
0
replies
1.9k
views
Comment:
C: Bug in makeOrgPackageFromNCBI from AnnotationForge?
5.7 years ago
Malcolm Cook
★ 1.6k
0
votes
1
reply
2.5k
views
Comment:
C: Yeast org.Sc.sgd.db lacks SYMBOL - should it have one? - how to make it interope
5.7 years ago
Malcolm Cook
★ 1.6k
0
votes
1
reply
1.1k
views
Comment:
C: GenomicFeatures supportedUCSCFeatureDbTracks never returns and has to be termina
6.0 years ago
Malcolm Cook
★ 1.6k
0
votes
1
reply
1.1k
views
Comment:
C: GenomicFeatures supportedUCSCFeatureDbTracks never returns and has to be termina
6.0 years ago
Malcolm Cook
★ 1.6k
0
votes
5
replies
1.1k
views
GenomicFeatures supportedUCSCFeatureDbTracks never returns and has to be terminated with C-c
genomicfeatures
bug
updated 6.0 years ago by
James W. MacDonald
67k • written 6.0 years ago by
Malcolm Cook
★ 1.6k
0
votes
0
replies
2.0k
views
Comment:
C: Reorder exons on negative strand in GRanges list
6.1 years ago
Malcolm Cook
★ 1.6k
0
votes
1
reply
2.0k
views
Comment:
C: Reorder exons on negative strand in GRanges list
6.1 years ago
Malcolm Cook
★ 1.6k
0
votes
0
replies
3.4k
views
Comment:
C: Element-wise setdiff when psetdiff fails for GenomicRanges
6.1 years ago
Malcolm Cook
★ 1.6k
0
votes
1
reply
2.0k
views
Comment:
C: Reorder exons on negative strand in GRanges list
6.1 years ago
Malcolm Cook
★ 1.6k
0
votes
0
replies
2.5k
views
Comment:
C: makeTxDbFromGFF errors too many NAs and make.splicings
6.1 years ago
Malcolm Cook
★ 1.6k
2
votes
2
replies
2.5k
views
Answer:
A: extracting the genes associated with the groups or samples in pheatmap.
6.1 years ago
Malcolm Cook
★ 1.6k
0
votes
0
replies
1.7k
views
Answer:
A: Counting exonic and intronic reads for differential gene expression
6.2 years ago
Malcolm Cook
★ 1.6k
0
votes
0
replies
4.3k
views
Comment:
C: Function simplify fails when argument ont is set to "ALL" in enrichGO function i
6.2 years ago
Malcolm Cook
★ 1.6k
0
votes
1
reply
4.0k
views
Comment:
C: CDS phase information missing from GenomicFeatures
6.2 years ago
Malcolm Cook
★ 1.6k
0
votes
1
reply
4.0k
views
Comment:
C: CDS phase information missing from GenomicFeatures
6.2 years ago
Malcolm Cook
★ 1.6k
0
votes
1
reply
3.0k
views
Comment:
C: nthreads option does NOT work in rsubread featureCounts
6.6 years ago
Malcolm Cook
★ 1.6k
0
votes
0
replies
5.4k
views
Comment:
C: Error with featureCounts
6.6 years ago
Malcolm Cook
★ 1.6k
0
votes
0
replies
1.1k
views
coercion to Granges from empty data.frame ==> unexpected behavior ??
granges
coercion
6.7 years ago
Malcolm Cook
★ 1.6k
0
votes
0
replies
3.6k
views
Answer:
A: get vertex xy coords from igraph mst plot
7.1 years ago
Malcolm Cook
★ 1.6k
1
vote
1
reply
2.6k
views
Comment:
C: Extract isoform-specific ranges
7.2 years ago
Malcolm Cook
★ 1.6k
0
votes
1
reply
2.6k
views
Comment:
C: Extract isoform-specific ranges
7.2 years ago
Malcolm Cook
★ 1.6k
1
vote
1
reply
2.6k
views
Comment:
C: Extract isoform-specific ranges
7.2 years ago
Malcolm Cook
★ 1.6k
2
votes
1
reply
2.6k
views
Answer:
A: Extract isoform-specific ranges
7.2 years ago
Malcolm Cook
★ 1.6k
1
vote
0
replies
2.6k
views
Comment:
C: Extract isoform-specific ranges
7.2 years ago
Malcolm Cook
★ 1.6k
0
votes
0
replies
981
views
HowTo: install just html help on top of existing packages
bioclite
package installation
update
7.7 years ago
Malcolm Cook
★ 1.6k
1
vote
1
reply
8.9k
views
Comment:
C: Which package to run blast
8.2 years ago
Malcolm Cook
★ 1.6k
1
vote
1
reply
8.9k
views
Answer:
A: Which package to run blast
8.2 years ago
Malcolm Cook
★ 1.6k
0
votes
1
reply
1.4k
views
HowTo? Provide a different fill color for each rectangle in an Gviz AnnotationTrack ?
Gviz
color
updated 8.2 years ago by
florian.hahne@novartis.com
★ 1.6k • written 8.2 years ago by
Malcolm Cook
★ 1.6k
191 results • Page
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