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Answer: Answer: Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
9 months ago Matthias Lienhard ▴ 280
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Answer: Answer: QSEA: normalisation >> sequencing preference
19 months ago Matthias Lienhard ▴ 280
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Answer: Answer: Manual import of CNV data (created with IchorCNA) into QSEAsest wit addCNV()
19 months ago Matthias Lienhard ▴ 280
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Predict branchpoints closer to the 3' splice site
branchpointer
2.6 years ago Matthias Lienhard ▴ 280
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Comment: Comment: QSEA : Internal CNV analysis and cancer type-specific TCGA 450K Human Methylatio
3.3 years ago Matthias Lienhard ▴ 280
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Comment: Comment: QSEA : Internal CNV analysis and cancer type-specific TCGA 450K Human Methylatio
3.4 years ago Matthias Lienhard ▴ 280
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Comment: Comment: QSEA : Internal CNV analysis and cancer type-specific TCGA 450K Human Methylatio
3.4 years ago Matthias Lienhard ▴ 280
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Comment: Comment: No beta scores generated in samples eluted at low salt concentration (MBD-seq) w
3.4 years ago Matthias Lienhard ▴ 280
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Answer: Answer: QSEA : Internal CNV analysis and cancer type-specific TCGA 450K Human Methylatio
3.4 years ago Matthias Lienhard ▴ 280
3
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1
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1.9k
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Answer: Answer: QSEA : Internal CNV analysis and cancer type-specific TCGA 450K Human Methylatio
3.4 years ago Matthias Lienhard ▴ 280
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Answer: Answer: addPatternDensity in 'qsea' takes too much time
3.7 years ago Matthias Lienhard ▴ 280
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Comment: C: Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
4.0 years ago Matthias Lienhard ▴ 280
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Comment: C: Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
4.2 years ago Matthias Lienhard ▴ 280
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3.5k
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Answer: A: Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
4.2 years ago Matthias Lienhard ▴ 280
0
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3.5k
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Comment: C: Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
4.2 years ago Matthias Lienhard ▴ 280
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Comment: C: Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
4.4 years ago Matthias Lienhard ▴ 280
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3.5k
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Comment: C: Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
4.4 years ago Matthias Lienhard ▴ 280
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Answer: A: Qsea - plotCoverage
4.4 years ago Matthias Lienhard ▴ 280
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Answer: A: Qsea - plotCoverage
4.4 years ago Matthias Lienhard ▴ 280
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Comment: C: Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
4.5 years ago Matthias Lienhard ▴ 280
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3.5k
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Comment: C: Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
4.6 years ago Matthias Lienhard ▴ 280
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1.2k
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Answer: A: Read counts between QSEA and MEDIPs
4.6 years ago Matthias Lienhard ▴ 280
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Answer: A: Qsea - addEnrichmentParameters() - Using INPUT Samples
4.6 years ago Matthias Lienhard ▴ 280
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Answer: A: MBDseq analysis using qsea package
5.1 years ago Matthias Lienhard ▴ 280
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Comment: C: qsea non-TCGA 450K Human Methylation Calibration Dataset
5.4 years ago Matthias Lienhard ▴ 280
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1.8k
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Comment: C: qsea non-TCGA 450K Human Methylation Calibration Dataset
6.2 years ago Matthias Lienhard ▴ 280
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950
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Answer: A: Error running the addCoverage command in QSEA with a custom BSGenome reference
6.3 years ago Matthias Lienhard ▴ 280
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1.8k
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Answer: A: qsea non-TCGA 450K Human Methylation Calibration Dataset
6.4 years ago Matthias Lienhard ▴ 280
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Comment: C: QSEA: Need help on creating ROI for whole genome MeDIPSeq data
6.6 years ago Matthias Lienhard ▴ 280
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Comment: C: QSEA Error while loading the bam files
6.6 years ago Matthias Lienhard ▴ 280
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1.3k
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Answer: A: QSEA: Need help on creating ROI for whole genome MeDIPSeq data
6.6 years ago Matthias Lienhard ▴ 280
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1.1k
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Answer: A: QSEA: Error while addLibraryFactors
6.6 years ago Matthias Lienhard ▴ 280
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1.4k
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Answer: A: QSEA Error while loading the bam files
6.6 years ago Matthias Lienhard ▴ 280
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Comment: C: CNV parameter not working - MEDIPS
7.4 years ago Matthias Lienhard ▴ 280
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1.8k
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Comment: C: CNV parameter not working - MEDIPS
7.4 years ago Matthias Lienhard ▴ 280
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1.8k
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Answer: A: CNV parameter not working - MEDIPS
7.4 years ago Matthias Lienhard ▴ 280
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Answer: A: Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
7.5 years ago Matthias Lienhard ▴ 280
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1
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1.5k
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Comment: C: Alternative methylation contexts with MEDIPS?
8.1 years ago Matthias Lienhard ▴ 280
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1.5k
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Answer: A: Alternative methylation contexts with MEDIPS?
8.2 years ago Matthias Lienhard ▴ 280
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Comment: C: New to R: How to use your own data for Bioconductor Packages
9.1 years ago Matthias Lienhard ▴ 280
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SssI free analysis in BayMeth/Repitools
repitools
9.2 years ago Matthias Lienhard ▴ 280
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1.5k
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Answer: A: Non-CpG Methylation in MEDIPS Package
9.5 years ago Matthias Lienhard ▴ 280
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Answer: A: mr.edgeR tests in MEDIPS package
10.4 years ago Matthias Lienhard ▴ 280
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Answer: A: [MEDIPS] mergeFrames: `Error in rbind(output, cbind(chromosomes[i], new_start, n
10.7 years ago Matthias Lienhard ▴ 280
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1.9k
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Comment: C: separate MEDIPS.createSet required for each replicate? RE: using custom BSgenome
10.8 years ago Matthias Lienhard ▴ 280
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1.9k
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Comment: C: separate MEDIPS.createSet required for each replicate? RE: using custom BSgenome
10.8 years ago Matthias Lienhard ▴ 280
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Answer: A: Question about MEDIPS extend parameter : RE: Success: RE: Seed file error: RE: B
10.8 years ago Matthias Lienhard ▴ 280
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