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Comment:
Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
3 months ago
Jonathan
▴ 10
3
votes
5
replies
1.4k
views
Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
limma
edgeR
biomaRt
updated 3 months ago by
James W. MacDonald
68k • written 3 months ago by
Jonathan
▴ 10
2
votes
2
replies
580
views
Automatically generate contrasts from a model matrix / formula
limma
updated 6 months ago by
ATpoint
★ 4.8k • written 6 months ago by
Jonathan
▴ 10
0
votes
0
replies
1.4k
views
Comment:
Comment: FilterByExpr low counts with small sample size
12 months ago
Jonathan
▴ 10
0
votes
1
reply
1.4k
views
Comment:
Comment: FilterByExpr low counts with small sample size
12 months ago
Jonathan
▴ 10
4
votes
6
replies
1.4k
views
FilterByExpr low counts with small sample size
edgeR
12 months ago
Jonathan
▴ 10
0
votes
0
replies
1.4k
views
Comment:
Comment: FilterByExpr low counts with small sample size
12 months ago
Jonathan
▴ 10
0
votes
1
reply
2.3k
views
Comment:
Comment: Batch correction and repeated measures
13 months ago
Jonathan
▴ 10
0
votes
1
reply
2.3k
views
Comment:
Comment: Batch correction and repeated measures
19 months ago
Jonathan
▴ 10
0
votes
1
reply
2.3k
views
Comment:
Comment: Batch correction and repeated measures
19 months ago
Jonathan
▴ 10
0
votes
1
reply
2.3k
views
Comment:
Comment: Batch correction and repeated measures
19 months ago
Jonathan
▴ 10
5
votes
9
replies
2.3k
views
Batch correction and repeated measures
RUVSeq
sva
limma
updated 12 months ago by
Gordon Smyth
52k • written 19 months ago by
Jonathan
▴ 10
0
votes
0
replies
510
views
Huge effect of a single sample on DEGs
limma
19 months ago
Jonathan
▴ 10
0
votes
1
reply
1.3k
views
Comment:
Comment: Phenotype effect - building a contrast matrix - grouping vs interaction
19 months ago
Jonathan
▴ 10
0
votes
1
reply
1.3k
views
Comment:
Comment: Phenotype effect - building a contrast matrix - grouping vs interaction
19 months ago
Jonathan
▴ 10
4
votes
5
replies
1.3k
views
Phenotype effect - building a contrast matrix - grouping vs interaction
limma
updated 19 months ago by
Gordon Smyth
52k • written 19 months ago by
Jonathan
▴ 10
0
votes
1
reply
1.3k
views
Comment:
Comment: Adding a group of samples reduces DEGs in other groups
21 months ago
Jonathan
▴ 10
0
votes
1
reply
1.3k
views
Comment:
Comment: Adding a group of samples reduces DEGs in other groups
21 months ago
Jonathan
▴ 10
6
votes
7
replies
1.3k
views
Adding a group of samples reduces DEGs in other groups
RNASeq
limma
updated 21 months ago by
Gordon Smyth
52k • written 21 months ago by
Jonathan
▴ 10
0
votes
0
replies
1.6k
views
Comment:
Comment: Limma multi-group, nested analysis with aggregation
21 months ago
Jonathan
▴ 10
0
votes
0
replies
1.3k
views
Comment:
Comment: Adding a group of samples reduces DEGs in other groups
21 months ago
Jonathan
▴ 10
2
votes
1
reply
1.1k
views
Grouping DEGs yields varying results
RNASeq
limma
updated 21 months ago by
Gordon Smyth
52k • written 21 months ago by
Jonathan
▴ 10
4
votes
2
replies
2.6k
views
Gene set analysis: GSVA, Z-Score, and fold-changes
GSVA
RNASeq
limma
updated 22 months ago by
Gordon Smyth
52k • written 22 months ago by
Jonathan
▴ 10
0
votes
1
reply
1.6k
views
Comment:
Comment: Limma multi-group, nested analysis with aggregation
24 months ago
Jonathan
▴ 10
0
votes
4
replies
1.6k
views
Limma multi-group, nested analysis with aggregation
limma
24 months ago • updated 21 months ago
Jonathan
▴ 10
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