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Comment: Comment: Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
3 months ago Jonathan ▴ 10
3
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5
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1.4k
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Differential expression of protein coding ENSGs (Ensembl IDs) | When to biomaRt?
limma edgeR biomaRt
updated 3 months ago by 68k • written 3 months ago by ▴ 10
2
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2
replies
582
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Automatically generate contrasts from a model matrix / formula
limma
updated 6 months ago by ★ 4.8k • written 6 months ago by ▴ 10
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0
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1.4k
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Comment: Comment: FilterByExpr low counts with small sample size
12 months ago Jonathan ▴ 10
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1
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1.4k
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Comment: Comment: FilterByExpr low counts with small sample size
12 months ago Jonathan ▴ 10
4
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6
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1.4k
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FilterByExpr low counts with small sample size
edgeR
12 months ago Jonathan ▴ 10
0
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0
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1.4k
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Comment: Comment: FilterByExpr low counts with small sample size
12 months ago Jonathan ▴ 10
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1
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2.3k
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Comment: Comment: Batch correction and repeated measures
13 months ago Jonathan ▴ 10
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1
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2.3k
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Comment: Comment: Batch correction and repeated measures
19 months ago Jonathan ▴ 10
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1
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2.3k
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Comment: Comment: Batch correction and repeated measures
19 months ago Jonathan ▴ 10
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1
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2.3k
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Comment: Comment: Batch correction and repeated measures
19 months ago Jonathan ▴ 10
5
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9
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2.3k
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Batch correction and repeated measures
RUVSeq sva limma
updated 12 months ago by 52k • written 19 months ago by ▴ 10
0
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0
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512
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Huge effect of a single sample on DEGs
limma
19 months ago Jonathan ▴ 10
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1
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1.3k
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Comment: Comment: Phenotype effect - building a contrast matrix - grouping vs interaction
19 months ago Jonathan ▴ 10
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1
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1.3k
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Comment: Comment: Phenotype effect - building a contrast matrix - grouping vs interaction
19 months ago Jonathan ▴ 10
4
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5
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1.3k
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Phenotype effect - building a contrast matrix - grouping vs interaction
limma
updated 19 months ago by 52k • written 19 months ago by ▴ 10
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1
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1.3k
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Comment: Comment: Adding a group of samples reduces DEGs in other groups
21 months ago Jonathan ▴ 10
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1
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1.3k
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Comment: Comment: Adding a group of samples reduces DEGs in other groups
21 months ago Jonathan ▴ 10
6
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7
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1.3k
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Adding a group of samples reduces DEGs in other groups
RNASeq limma
updated 21 months ago by 52k • written 21 months ago by ▴ 10
0
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0
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1.6k
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Comment: Comment: Limma multi-group, nested analysis with aggregation
21 months ago Jonathan ▴ 10
0
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0
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1.3k
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Comment: Comment: Adding a group of samples reduces DEGs in other groups
21 months ago Jonathan ▴ 10
2
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1
reply
1.1k
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Grouping DEGs yields varying results
RNASeq limma
updated 21 months ago by 52k • written 21 months ago by ▴ 10
4
votes
2
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2.6k
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Gene set analysis: GSVA, Z-Score, and fold-changes
GSVA RNASeq limma
updated 22 months ago by 52k • written 22 months ago by ▴ 10
0
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1
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1.6k
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Comment: Comment: Limma multi-group, nested analysis with aggregation
24 months ago Jonathan ▴ 10
0
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4
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1.6k
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Limma multi-group, nested analysis with aggregation
limma
24 months ago • updated 21 months ago Jonathan ▴ 10
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