Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
3
votes
1
reply
3.8k
views
Answer: A: Dispersion fit and p-value distributions
6.3 years ago Bernd Klaus ▴ 610
2
votes
1
reply
7.7k
views
Answer: A: DESeq2 dispersion and p-value histograms
7.3 years ago • updated 7.2 years ago Bernd Klaus ▴ 610
0
votes
0
replies
7.7k
views
Comment: C: DESeq2 dispersion and p-value histograms
7.2 years ago Bernd Klaus ▴ 610
0
votes
0
replies
2.2k
views
Comment: C: Error when restore rownames of Feature data of ExpressionSet
7.3 years ago Bernd Klaus ▴ 610
3
votes
6
replies
3.3k
views
function getAE from ArrayExpress needs update because EBI has switched to https
arrayexpress xml rcurl http EBI
updated 7.3 years ago by ★ 13k • written 7.3 years ago by ▴ 610
0
votes
1
reply
3.3k
views
Comment: C: function getAE from ArrayExpress needs update because EBI has switched to https
7.3 years ago Bernd Klaus ▴ 610
2
votes
0
replies
3.6k
views
Answer: A: DESEq2 p-values weird distribution under the H0 and fdrtool
7.4 years ago Bernd Klaus ▴ 610
0
votes
0
replies
4.9k
views
Answer: A: Alternative packages to limma for analysis of microarray datasets
7.7 years ago Bernd Klaus ▴ 610
0
votes
0
replies
3.5k
views
Answer: A: Inspection and Correction of p-values in DESeq2 pipeline by Bernd
7.9 years ago Bernd Klaus ▴ 610
0
votes
1
reply
3.5k
views
Comment: C: Inspection and Correction of p-values in DESeq2 pipeline by Bernd
7.9 years ago Bernd Klaus ▴ 610
1
vote
1
reply
2.2k
views
Answer: A: How to use 'IHW' package to filter genes?
8.0 years ago Bernd Klaus ▴ 610
1
vote
0
replies
2.8k
views
Comment: C: Design formula for use with DESeq2 with SVA
8.1 years ago Bernd Klaus ▴ 610
0
votes
0
replies
1.5k
views
Answer: A: No counts generated when running python counting script.
8.2 years ago Bernd Klaus ▴ 610
1
vote
0
replies
3.0k
views
Comment: C: DESeq2 interaction term
8.3 years ago Bernd Klaus ▴ 610
1
vote
0
replies
3.0k
views
Comment: C: DESeq2 interaction term
8.3 years ago Bernd Klaus ▴ 610
1
vote
0
replies
1.3k
views
Answer: A: About interaction effect 2
8.3 years ago Bernd Klaus ▴ 610
2
votes
0
replies
3.0k
views
Answer: A: DESeq2 interaction term
8.3 years ago Bernd Klaus ▴ 610
3
votes
0
replies
2.2k
views
Answer: A: Problem using sva with limma for microarray DE analysis
8.3 years ago Bernd Klaus ▴ 610
2
votes
1
reply
5.9k
views
Comment: C: Correcting for known and surrogate variables in DESeq2
8.3 years ago Bernd Klaus ▴ 610
2
votes
1
reply
2.2k
views
Answer: A: Problem using sva with limma for microarray DE analysis
8.3 years ago Bernd Klaus ▴ 610
0
votes
1
reply
5.9k
views
Comment: C: Correcting for known and surrogate variables in DESeq2
8.3 years ago Bernd Klaus ▴ 610
1
vote
1
reply
5.9k
views
Answer: A: Correcting for known and surrogate variables in DESeq2
8.3 years ago Bernd Klaus ▴ 610
0
votes
0
replies
2.0k
views
Comment: C: Paired design, normalisation and batch effects.
8.5 years ago Bernd Klaus ▴ 610
1
vote
1
reply
2.0k
views
Answer: A: Paired design, normalisation and batch effects.
8.5 years ago Bernd Klaus ▴ 610
1
vote
1
reply
2.0k
views
Comment: C: Trying to account for gene length in topGO analysis
8.6 years ago Bernd Klaus ▴ 610
2
votes
1
reply
2.0k
views
Answer: A: Trying to account for gene length in topGO analysis
8.6 years ago Bernd Klaus ▴ 610
1
vote
2
replies
1.9k
views
Answer: A: Microarray data preprocessing and differentially expressed genes
8.6 years ago Bernd Klaus ▴ 610
1
vote
0
replies
3.9k
views
Answer: A: DESeq2 and fdrtool: applying FDR correction when the empirical sigma is greater
8.6 years ago Bernd Klaus ▴ 610
1
vote
0
replies
3.0k
views
Comment: C: Is this the correct way of doing a paired t-test in limma using contrasts
8.7 years ago Bernd Klaus ▴ 610
1
vote
1
reply
2.1k
views
Comment: C: Overriding of shrinkage in DESeq2
8.8 years ago Bernd Klaus ▴ 610
2
votes
0
replies
2.9k
views
Answer: A: ribosome profiling and rna seq data with Deseq2 package
8.9 years ago Bernd Klaus ▴ 610
1
vote
0
replies
14k
views
Answer: A: Is the following a correct usage of Limma's removeBatchEffect() for clustered he
9.1 years ago Bernd Klaus ▴ 610
1
vote
1
reply
12k
views
Comment: C: DESeq2 and ComBat
9.1 years ago Bernd Klaus ▴ 610
0
votes
0
replies
12k
views
Comment: C: DESeq2 and ComBat
9.1 years ago Bernd Klaus ▴ 610
0
votes
1
reply
12k
views
Comment: C: DESeq2 and ComBat
9.1 years ago Bernd Klaus ▴ 610
0
votes
1
reply
12k
views
Answer: A: DESeq2 and ComBat
9.1 years ago Bernd Klaus ▴ 610
0
votes
1
reply
5.6k
views
Comment: C: DESEQ2 with 3 biological replicates for control and 1 biological replicate for t
9.2 years ago Bernd Klaus ▴ 610
0
votes
0
replies
5.6k
views
Comment: C: DESEQ2 with 3 biological replicates for control and 1 biological replicate for t
9.2 years ago Bernd Klaus ▴ 610
0
votes
1
reply
5.6k
views
Answer: A: DESEQ2 with 3 biological replicates for control and 1 biological replicate for t
9.2 years ago Bernd Klaus ▴ 610
0
votes
1
reply
6.7k
views
Comment: C: DeSeq2 - hill–shaped histogram of pvalues
9.4 years ago Bernd Klaus ▴ 610
3
votes
1
reply
6.7k
views
Answer: A: DeSeq2 - hill–shaped histogram of pvalues
9.4 years ago Bernd Klaus ▴ 610
2
votes
1
reply
16k
views
Answer: A: using duplicateCorrelation with limma+voom for RNA-seq data
updated 9.7 years ago by 52k • written 10.7 years ago by ▴ 610
0
votes
1
reply
1.9k
views
Comment: C: Fwd: limma modeling, paired samples
updated 9.8 years ago by 52k • written 10.7 years ago by ▴ 610
2
votes
2
replies
3.1k
views
Answer: A: Help with DESeq2 Multiple Factor Design
9.9 years ago Bernd Klaus ▴ 610
1
vote
0
replies
22k
views
Answer: A: Integrating DESeq2 and TopGO for Enrichment
10.0 years ago Bernd Klaus ▴ 610
0
votes
0
replies
5.4k
views
Answer: A: topGO: How to create gene2GO annotation for mouse?
10.0 years ago Bernd Klaus ▴ 610
1
vote
0
replies
1.6k
views
Answer: A: ComBat (SVA) Application - Two Technical Effects
10.0 years ago Bernd Klaus ▴ 610
1
vote
1
reply
5.2k
views
Answer: A: deseq2 - PCA plot
10.1 years ago Bernd Klaus ▴ 610
2
votes
0
replies
2.9k
views
Answer: A: topGO: how to visualize gene in GO enriched categories?
updated 10.4 years ago by 25k • written 10.4 years ago by ▴ 610
0
votes
0
replies
2.8k
views
Answer: A: design matrix in limma
10.4 years ago Bernd Klaus ▴ 610
63 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6