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Custom dispersion estimate DESeq2
deseq2 edger
updated 4.2 years ago by ★ 28k • written 4.2 years ago by ▴ 110
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1.3k
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Comment: C: LIMMA: ~ continuous predictor by group. How to get within-group results?
4.2 years ago Sindre ▴ 110
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1
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1.3k
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Comment: C: LIMMA: ~ continuous predictor by group. How to get within-group results?
4.2 years ago Sindre ▴ 110
3
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7
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1.3k
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LIMMA: ~ continuous predictor by group. How to get within-group results?
limma interaction
4.3 years ago • updated 4.2 years ago Sindre ▴ 110
0
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1
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1.3k
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Comment: C: LIMMA: ~ continuous predictor by group. How to get within-group results?
4.2 years ago Sindre ▴ 110
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0
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1.1k
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Comment: C: Two-way interaction, linear redundancy
5.3 years ago Sindre ▴ 110
4
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2
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1.1k
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Two-way interaction, linear redundancy
limma caret lm lmer lme4
updated 5.3 years ago by ★ 28k • written 5.3 years ago by ▴ 110
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2.5k
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Comment: A: Best way of presenting "absolute" expression values (edgeR)
10.6 years ago Sindre ▴ 110
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2
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2.5k
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Best way of presenting "absolute" expression values (edgeR)
RNASeq edgeR RNASeq edgeR
updated 21 months ago by 51k • written 10.6 years ago by ▴ 110
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2.6k
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Comment: C: Filter out genes with small profile variance from gene expression data
10.7 years ago Sindre ▴ 110
0
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1
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996
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Quick question about Chromosome names using Tophat2 and Cufflinks w/Ensembl NCBIM37
updated 10.7 years ago by 67k • written 10.7 years ago by ▴ 110
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3
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2.7k
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edgeR: plotBCV, gof() and plotMDS, for outlier detection
edgeR edgeR
updated 10.7 years ago by ▴ 890 • written 10.7 years ago by ▴ 110
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0
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1.9k
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Labeling BAM files in Cufflinks/Cuffdiff input
10.9 years ago Sindre ▴ 110
0
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4
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1.6k
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edgeR with two different groups (unpaired) at two time points (paired): Need some input
edgeR edgeR
updated 11.1 years ago by 51k • written 11.1 years ago by ▴ 110
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0
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845
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edgeR with two different groups (unpaired) at two time points (paired): Need some input
11.1 years ago Sindre ▴ 110
0
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1
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1.6k
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Answer: A: edgeR with two different groups (unpaired) at two time points (paired): Need som
11.1 years ago Sindre ▴ 110
0
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1
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1.5k
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Paired data for DEseq2: Multifactorial design
limma limma
updated 11.1 years ago by 43k • written 11.1 years ago by ▴ 110
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