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Comment: Comment: Feature Counts - potential bug with outfile.jcounts
4 months ago Yang Liao ▴ 450
1
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1
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1.0k
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Comment: Comment: featureCounts segmentation fault with large chromosomes
6 months ago Yang Liao ▴ 450
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1.2k
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Answer: Answer: featureCounts fails to load annotation file
6 months ago Yang Liao ▴ 450
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0
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979
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Comment: Comment: Rsubread alignment crashes at 35%, valgrind indicates invalid writes
6 months ago Yang Liao ▴ 450
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1
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979
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Comment: Comment: Rsubread alignment crashes at 35%, valgrind indicates invalid writes
7 months ago Yang Liao ▴ 450
0
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1
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979
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Comment: Comment: Rsubread alignment crashes at 35%, valgrind indicates invalid writes
7 months ago Yang Liao ▴ 450
0
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1
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932
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Answer: Answer: featureCounts error: Assertion `numOfBuckets > 0' failed
8 months ago Yang Liao ▴ 450
0
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1
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932
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Comment: Comment: featureCounts error: Assertion `numOfBuckets > 0' failed
9 months ago Yang Liao ▴ 450
4
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1
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1.4k
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Answer: Answer: Behaviour of featureCounts when quantifying multi-mapping reads
10 months ago Yang Liao ▴ 450
2
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1
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1.2k
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Answer: Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
10 months ago Yang Liao ▴ 450
0
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0
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773
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Comment: Comment: RSubread cellCounts - memory mapping error with NovoSeq but not NextSeq output
13 months ago Yang Liao ▴ 450
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2
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2.9k
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Comment: Comment: Rsubread - Error on buildindex - big ref sequence
21 months ago Yang Liao ▴ 450
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6.8k
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Comment: Comment: featureCounts (subread v2.0.2) ERROR: invalid parameter: '−−countReadPairs'
21 months ago Yang Liao ▴ 450
1
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0
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1.1k
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Answer: Answer: featureCounts bug with unpaired reads
21 months ago Yang Liao ▴ 450
1
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0
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1.3k
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Answer: Answer: Rsubread: subjunc() loads index repeatedly
21 months ago Yang Liao ▴ 450
0
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1
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2.8k
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Comment: Comment: FeatureCounts output to SAM like htseq-counts?
22 months ago • updated 21 months ago Yang Liao ▴ 450
0
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0
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1.3k
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Answer: Answer: Subread installation on Linux ARM64
2.2 years ago Yang Liao ▴ 450
0
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1
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4.7k
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Comment: Comment: cellCounts() function floating point error
2.8 years ago Yang Liao ▴ 450
0
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1
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4.7k
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Comment: Comment: cellCounts() function floating point error
2.8 years ago Yang Liao ▴ 450
2
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1
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5.1k
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Comment: Comment: The low successful assignment ratio of FeatureCounts
3.0 years ago Yang Liao ▴ 450
0
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1
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2.5k
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Comment: Comment: Subread installation
3.0 years ago Yang Liao ▴ 450
0
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0
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1.2k
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Comment: Comment: segfault memory not mapped when using sortReadsByCoordinates = TRUE in Rsubread
3.2 years ago Yang Liao ▴ 450
1
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1
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4.7k
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Comment: Comment: Error in Rsubread featureCounts
3.2 years ago Yang Liao ▴ 450
2
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1
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4.7k
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Comment: Comment: Error in Rsubread featureCounts
3.2 years ago Yang Liao ▴ 450
1
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1
reply
2.9k
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Comment: Comment: How to use subjunc for differential splicing analysis?
3.3 years ago Yang Liao ▴ 450
1
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1
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6.3k
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Comment: Comment: FeatureCounts
3.5 years ago Yang Liao ▴ 450
1
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1
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6.3k
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Comment: Comment: FeatureCounts
3.5 years ago Yang Liao ▴ 450
0
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1
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4.6k
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Comment: Comment: Help with this in Rstudio - ERROR: the BAM input file, 'sample.bam', doesn't hav
3.5 years ago Yang Liao ▴ 450
0
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1
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4.6k
views
Comment: Comment: Help with this in Rstudio - ERROR: the BAM input file, 'sample.bam', doesn't hav
3.5 years ago Yang Liao ▴ 450
0
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0
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2.3k
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Answer: Answer: Rsubread featureCounts segmentation fault with lots of read groups
3.5 years ago Yang Liao ▴ 450
0
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1
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4.6k
views
Comment: Comment: Help with this in Rstudio - ERROR: the BAM input file, 'sample.bam', doesn't hav
3.5 years ago Yang Liao ▴ 450
0
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0
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2.8k
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Comment: Comment: "ERROR: cannot create temp file" when using buildindex from Rsubread
3.6 years ago Yang Liao ▴ 450
0
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1
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2.8k
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Comment: Comment: "ERROR: cannot create temp file" when using buildindex from Rsubread
3.6 years ago Yang Liao ▴ 450
0
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2
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6.8k
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Answer: Answer: featureCounts (subread v2.0.2) ERROR: invalid parameter: '−−countReadPairs'
3.8 years ago Yang Liao ▴ 450
0
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0
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2.9k
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Comment: Comment: Rsubread requests longread mode for shotgun RNAseq data
3.9 years ago Yang Liao ▴ 450
2
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1
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2.8k
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Answer: Answer: Rsubread issue with featurecounts :----------- FAILURE REPORT -------------- --
3.9 years ago Yang Liao ▴ 450
1
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0
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2.8k
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Comment: Comment: Rsubread issue with featurecounts :----------- FAILURE REPORT -------------- --
3.9 years ago Yang Liao ▴ 450
1
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1
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2.8k
views
Comment: Comment: Rsubread issue with featurecounts :----------- FAILURE REPORT -------------- --
3.9 years ago Yang Liao ▴ 450
0
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0
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2.3k
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Comment: Comment: ERROR: cannot finish the BAM file. Please check the disk space in the output dir
4.0 years ago Yang Liao ▴ 450
0
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1
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2.3k
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Comment: Comment: ERROR: cannot finish the BAM file. Please check the disk space in the output dir
4.1 years ago Yang Liao ▴ 450
0
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0
replies
2.3k
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Answer: Answer: Error when loading annotation featureCounts
4.1 years ago Yang Liao ▴ 450
0
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1
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2.3k
views
Comment: Comment: ERROR: cannot finish the BAM file. Please check the disk space in the output dir
4.2 years ago Yang Liao ▴ 450
0
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0
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7.7k
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Comment: Comment: Rsubread::featureCounts extremely slow on some annotations
4.4 years ago Yang Liao ▴ 450
0
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0
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7.7k
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Comment: Comment: Rsubread::featureCounts extremely slow on some annotations
4.4 years ago Yang Liao ▴ 450
0
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0
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2.3k
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Comment: Comment: Rsubread unable to return alignments
4.4 years ago Yang Liao ▴ 450
2
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0
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2.0k
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Answer: A: featureCounts chrAliases not working as expected
5.0 years ago Yang Liao ▴ 450
0
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0
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2.0k
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Comment: C: featureCounts chrAliases not working as expected
5.0 years ago Yang Liao ▴ 450
0
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1
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2.0k
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Comment: C: featureCounts chrAliases not working as expected
5.0 years ago Yang Liao ▴ 450
0
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1
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2.9k
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Answer: A: Rsubread - Error on buildindex - big ref sequence
5.1 years ago Yang Liao ▴ 450
0
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0
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2.9k
views
Comment: C: Rsubread - Error on buildindex - big ref sequence
5.1 years ago Yang Liao ▴ 450
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