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Comment: C: pre-ranked GSEA within R? + Best DESeq2/limma-voom metric?
updated 6.5 years ago by 51k • written 10.8 years ago by ▴ 310
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plotSplice plotting only exons passing the filter makes the plot loose gene structure
limma diffSplice plotSplice exons annotation
9.3 years ago Jose M Garcia Manteiga ▴ 310
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4.0k
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Comment: C: edgeR MDS
updated 9.7 years ago by 51k • written 11.5 years ago by ▴ 310
2
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1
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1.8k
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calcNormFactors TMM vs RLE - plotMA not centered
normalization edger
updated 10.0 years ago by 51k • written 10.0 years ago by ▴ 310
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1.3k
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Comment: C: What are the best packages to compare multiple DE gene lists?
10.2 years ago Jose M Garcia Manteiga ▴ 310
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1
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3.4k
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Comment: C: Annotation files for bacterial genome RNAseq
10.4 years ago Jose M Garcia Manteiga ▴ 310
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1.7k
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Comment: C: DEXSeq output - count file
10.6 years ago Jose M Garcia Manteiga ▴ 310
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1
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1.7k
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Comment: C: DEXSeq output - count file
10.6 years ago Jose M Garcia Manteiga ▴ 310
0
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1
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1.7k
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Answer: A: DEXSeq output - count file
10.6 years ago Jose M Garcia Manteiga ▴ 310
0
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1
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1.9k
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Comment: C: DEXSeq output - count file
10.7 years ago Jose M Garcia Manteiga ▴ 310
0
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1
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1.9k
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Comment: C: DEXSeq output - count file
10.7 years ago Jose M Garcia Manteiga ▴ 310
0
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0
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1.3k
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Comment: C: dexseq zero length exons
10.7 years ago Jose M Garcia Manteiga ▴ 310
0
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2
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1.3k
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dexseq zero length exons
Annotation DEXSeq Annotation DEXSeq
updated 10.7 years ago by ★ 1.9k • written 10.7 years ago by ▴ 310
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1.4k
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Comment: C: Annotation different expressed exon. results from DESeq
10.7 years ago Jose M Garcia Manteiga ▴ 310
0
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0
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1.9k
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Comment: C: dexseq_count.py SAM "NH" taq
10.8 years ago Jose M Garcia Manteiga ▴ 310
0
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3
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1.9k
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dexseq_count.py SAM "NH" taq
DEXSeq DEXSeq
10.8 years ago Jose M Garcia Manteiga ▴ 310
0
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0
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1.9k
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Answer: A: dexseq_count.py SAM "NH" taq
10.8 years ago Jose M Garcia Manteiga ▴ 310
0
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1
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4.3k
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Answer: A: pre-ranked GSEA within R? + Best DESeq2/limma-voom metric?
10.8 years ago Jose M Garcia Manteiga ▴ 310
0
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0
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8.3k
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Comment: C: DESeq2: NA on padj column when doing bonferroni
10.9 years ago Jose M Garcia Manteiga ▴ 310
0
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1
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13k
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Comment: C: pre-ranked GSEA within R?
10.9 years ago Jose M Garcia Manteiga ▴ 310
1
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1
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13k
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Answer: A: pre-ranked GSEA within R?
10.9 years ago Jose M Garcia Manteiga ▴ 310
0
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1
reply
2.3k
views
deseq2 plotMA
GO graph DESeq2 GO graph DESeq2
updated 11.1 years ago by 42k • written 11.1 years ago by ▴ 310
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4.9k
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Comment: C: Summarized Experiments - Combine
11.1 years ago Jose M Garcia Manteiga ▴ 310
0
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2
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4.9k
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Summarized Experiments - Combine
DESeq DESeq2 DESeq DESeq2
updated 11.1 years ago by ★ 6.8k • written 11.1 years ago by ▴ 310
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3.1k
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Comment: C: DESeq2 : when the variable of interest is not a factor
11.2 years ago Jose M Garcia Manteiga ▴ 310
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2
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3.1k
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Answer: A: DESeq2 : when the variable of interest is not a factor
11.2 years ago Jose M Garcia Manteiga ▴ 310
0
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0
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3.1k
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Answer: A: DESeq2 : when the variable of interest is not a factor
11.2 years ago Jose M Garcia Manteiga ▴ 310
0
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0
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1.3k
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Comment: C: DESeq2 design formula error?
11.4 years ago Jose M Garcia Manteiga ▴ 310
0
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2
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1.8k
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HT-Seq count and GTF
updated 11.4 years ago by ★ 3.8k • written 11.4 years ago by ▴ 310
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0
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1.2k
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Comment: C: input format for Mfuzz clustering
11.4 years ago Jose M Garcia Manteiga ▴ 310
0
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2
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1.2k
views
Gene Ontologies exploration
goProfiles GeneAnswers goProfiles GeneAnswers
updated 11.8 years ago by ★ 7.2k • written 11.8 years ago by ▴ 310
31 results • Page 1 of 1
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