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9
votes
8
replies
10k
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removeBatchEffect options: design and covariates
limma removebatcheffect
updated 7.6 years ago by 52k • written 10.7 years ago by ▴ 550
0
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1
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10k
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Comment: C: removeBatchEffect options: design and covariates
updated 7.6 years ago by 52k • written 10.7 years ago by ▴ 550
0
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1
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10k
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Comment: C: removeBatchEffect options: design and covariates
updated 7.6 years ago by 52k • written 10.7 years ago by ▴ 550
0
votes
1
reply
10k
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Comment: C: removeBatchEffect options: design and covariates
updated 7.6 years ago by 52k • written 10.7 years ago by ▴ 550
0
votes
5
replies
4.9k
views
DESeq2 DESeqDataSetFromMatrix problem
deseq2
10.3 years ago Rao,Xiayu ▴ 550
0
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0
replies
4.9k
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Answer: A: DESeq2 DESeqDataSetFromMatrix problem
10.3 years ago Rao,Xiayu ▴ 550
0
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1
reply
4.9k
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Comment: C: DESeq2 DESeqDataSetFromMatrix problem
10.3 years ago Rao,Xiayu ▴ 550
0
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0
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2.6k
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Comment: C: what causes the difference in the topTable results by the two analyses using lim
10.5 years ago Rao,Xiayu ▴ 550
6
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7
replies
2.6k
views
what causes the difference in the topTable results by the two analyses using limma?
limma topTable
updated 10.5 years ago by ★ 28k • written 10.5 years ago by ▴ 550
0
votes
1
reply
3.1k
views
removeBatchEffect and random effect
limma
updated 10.6 years ago by 52k • written 10.6 years ago by ▴ 550
0
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0
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6.1k
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Answer: A: limma design matrix and contrast specification for time course PCR data with two
10.6 years ago Rao,Xiayu ▴ 550
0
votes
1
reply
1.8k
views
Comment: C: Any problem with the design matrix or the contrasts? Thanks
10.7 years ago Rao,Xiayu ▴ 550
0
votes
1
reply
1.8k
views
Comment: C: Any problem with the design matrix or the contrasts? Thanks
10.7 years ago Rao,Xiayu ▴ 550
0
votes
6
replies
1.8k
views
Any problem with the design matrix or the contrasts? Thanks
updated 10.7 years ago by ★ 7.9k • written 10.7 years ago by ▴ 550
0
votes
0
replies
1.2k
views
Answer: A: multi-level design - a simplified question - corrected table
10.7 years ago Rao,Xiayu ▴ 550
0
votes
0
replies
1.1k
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multi-level design - a simplified question - corrected table
10.7 years ago Rao,Xiayu ▴ 550
0
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0
replies
1.2k
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multi-level design - a simplified question
10.7 years ago Rao,Xiayu ▴ 550
0
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0
replies
1.2k
views
multi-level experiments - limma
Normalization limma Normalization limma
10.7 years ago Rao,Xiayu ▴ 550
0
votes
0
replies
1.6k
views
Comment: C: DEXSeq- fitDispersionFunction error
10.7 years ago Rao,Xiayu ▴ 550
0
votes
1
reply
940
views
remove duplicated rows generated by read.ilmn()
limma limma
10.7 years ago Rao,Xiayu ▴ 550
0
votes
0
replies
940
views
Answer: A: remove duplicated rows generated by read.ilmn()
10.7 years ago Rao,Xiayu ▴ 550
0
votes
0
replies
1.1k
views
multi-level design and contrasts problem - limma
limma limma
10.7 years ago Rao,Xiayu ▴ 550
0
votes
1
reply
2.2k
views
heatmap.2 x-axis label order problem
updated 10.7 years ago by 68k • written 10.7 years ago by ▴ 550
0
votes
1
reply
889
views
Comment: C: time course experiment
10.7 years ago Rao,Xiayu ▴ 550
0
votes
1
reply
889
views
Answer: A: time course experiment
10.7 years ago Rao,Xiayu ▴ 550
0
votes
1
reply
4.7k
views
Comment: C: annotating microarray data with mogene10stv1
10.7 years ago Rao,Xiayu ▴ 550
0
votes
0
replies
1.8k
views
Comment: C: Affymetrix mouse 430_2 array - annotation problem
10.7 years ago Rao,Xiayu ▴ 550
0
votes
2
replies
1.8k
views
Affymetrix mouse 430_2 array - annotation problem
Annotation mouse4302 annotate Annotation mouse4302 annotate
updated 10.7 years ago by 68k • written 10.7 years ago by ▴ 550
0
votes
1
reply
1.2k
views
time course experiment design
limma limma
updated 10.7 years ago by 68k • written 10.7 years ago by ▴ 550
0
votes
0
replies
2.1k
views
Comment: C: Affymetrix mouse 430_2 array - gene expression and annotation
10.7 years ago Rao,Xiayu ▴ 550
0
votes
1
reply
2.1k
views
Comment: C: Affymetrix mouse 430_2 array - gene expression and annotation
10.7 years ago Rao,Xiayu ▴ 550
0
votes
4
replies
2.1k
views
Affymetrix mouse 430_2 array - gene expression and annotation
Annotation mouse4302 probe oligo Annotation mouse4302 probe oligo
updated 10.7 years ago by 68k • written 10.7 years ago by ▴ 550
0
votes
1
reply
5.9k
views
Answer: A: DESeq2 transcript level
10.9 years ago Rao,Xiayu ▴ 550
0
votes
0
replies
1.6k
views
Comment: C: dexseq fitDispersionFunction(ecs) error
11.0 years ago Rao,Xiayu ▴ 550
0
votes
2
replies
1.6k
views
dexseq fitDispersionFunction(ecs) error
GO DEXSeq GO DEXSeq
updated 11.0 years ago by ★ 1.9k • written 11.0 years ago by ▴ 550
0
votes
0
replies
2.3k
views
Comment: C: dexseq read.HTSeqCounts error
11.0 years ago Rao,Xiayu ▴ 550
0
votes
3
replies
2.3k
views
dexseq read.HTSeqCounts error
DEXSeq DEXSeq
updated 11.0 years ago by ★ 1.9k • written 11.0 years ago by ▴ 550
0
votes
1
reply
827
views
R 3.1.0 and dexseq 1.8.0
GO DEXSeq GO DEXSeq
updated 11.0 years ago by 25k • written 11.0 years ago by ▴ 550
0
votes
5
replies
2.0k
views
DEXSeq output - count file
DEXSeq DEXSeq
11.1 years ago Rao,Xiayu ▴ 550
0
votes
1
reply
2.0k
views
Answer: A: DEXSeq output - count file
11.1 years ago Rao,Xiayu ▴ 550
0
votes
1
reply
1.9k
views
aggregate genes in DEXSeq
DEXSeq DEXSeq
updated 11.1 years ago by ★ 1.9k • written 11.1 years ago by ▴ 550
0
votes
0
replies
1.0k
views
variation between chips - neqc()
Microarray Normalization probe limma lumi Microarray Normalization probe limma lumi
11.5 years ago Rao,Xiayu ▴ 550
0
votes
1
reply
2.4k
views
preprocessCore load problem in R
updated 11.6 years ago by ★ 8.2k • written 11.6 years ago by ▴ 550
0
votes
0
replies
1.2k
views
symbol and filtering -affy hugene ST 1.0 -oligo limma
Microarray limma Microarray limma
11.7 years ago Rao,Xiayu ▴ 550
0
votes
0
replies
1.9k
views
Comment: C: getSYMBOL( ) error
11.7 years ago Rao,Xiayu ▴ 550
0
votes
2
replies
1.9k
views
getSYMBOL( ) error
updated 11.7 years ago by 68k • written 11.7 years ago by ▴ 550
0
votes
0
replies
1.2k
views
illumina microarray and affymetrix exon array data
Microarray affy Microarray affy
11.7 years ago Rao,Xiayu ▴ 550
0
votes
4
replies
1.7k
views
read.ilmn() and variation between chips
Microarray Normalization probe limma Microarray Normalization probe limma
updated 11.8 years ago by 52k • written 11.8 years ago by ▴ 550
0
votes
0
replies
1.7k
views
Comment: C: read.ilmn() and variation between chips
11.8 years ago Rao,Xiayu ▴ 550
0
votes
0
replies
1.7k
views
Comment: C: read.ilmn() and variation between chips
11.8 years ago Rao,Xiayu ▴ 550
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