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Answer: Answer: PCA plot suggestions
6 weeks ago Michael Love 42k
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284
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Answer: Answer: Deseq2. decontXcounts not integers. Useful alternative?
6 weeks ago Michael Love 42k
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198
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Answer: Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
7 weeks ago Michael Love 42k
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267
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Comment: Comment: Different Shrunk Log2FC according with reference
7 weeks ago Michael Love 42k
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363
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Answer: Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
7 weeks ago Michael Love 42k
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Comment: Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
7 weeks ago Michael Love 42k
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290
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Comment: Comment: DESeq2 - dispersion estimation when there is none
7 weeks ago Michael Love 42k
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290
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Answer: Answer: DESeq2 - dispersion estimation when there is none
7 weeks ago Michael Love 42k
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481
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Comment: Comment: DESeq filtering specific to contrasts
7 weeks ago Michael Love 42k
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849
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Comment: Comment: DESeq2 setting significant p-value
7 weeks ago Michael Love 42k
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481
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Comment: Comment: DESeq filtering specific to contrasts
7 weeks ago Michael Love 42k
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1.9k
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Comment: Comment: Which input file is used for DGEList in EgdeR?
7 weeks ago Michael Love 42k
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2.7k
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Comment: Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
7 weeks ago Michael Love 42k
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323
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Comment: Comment: DEG with low counts
7 weeks ago Michael Love 42k
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481
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Comment: Comment: DESeq filtering specific to contrasts
7 weeks ago Michael Love 42k
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175
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Answer: Answer: rlog transformation
8 weeks ago Michael Love 42k
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167
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Answer: Answer: ONT long-read RNA sequencing - data analysis options
8 weeks ago Michael Love 42k
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843
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Answer: Answer: DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
8 weeks ago Michael Love 42k
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163
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Answer: Answer: covariate with negative and positive values
8 weeks ago Michael Love 42k
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849
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Comment: Comment: DESeq2 setting significant p-value
8 weeks ago Michael Love 42k
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665
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Comment: Comment: How to correct for known and surrogate variables in DESeq2?
8 weeks ago Michael Love 42k
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245
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Comment: Comment: Interaction Terms in DESeq2 - Shrinkage
8 weeks ago Michael Love 42k
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1
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288
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Answer: Answer: How to retrieve detailed regression results from deseq2
8 weeks ago Michael Love 42k
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1
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323
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Answer: Answer: DEG with low counts
8 weeks ago Michael Love 42k
1
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1
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1.9k
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Comment: Comment: Which input file is used for DGEList in EgdeR?
8 weeks ago Michael Love 42k
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267
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Comment: Comment: Interaction term vs grouping variable design considerations
9 weeks ago Michael Love 42k
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267
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Answer: Answer: Interaction term vs grouping variable design considerations
9 weeks ago Michael Love 42k
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218
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Answer: Answer: IgG control in RIP-seq with Deseq2
9 weeks ago Michael Love 42k
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296
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Answer: Answer: Regressing out batch effects
9 weeks ago Michael Love 42k
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503
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Comment: Comment: DESeq2 step-by-step Normalization then DGE separately & Normalization methods an
10 weeks ago Michael Love 42k
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2.7k
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Comment: Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
10 weeks ago Michael Love 42k
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2
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2.7k
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Comment: Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
10 weeks ago Michael Love 42k
0
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1
reply
2.7k
views
Comment: Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
10 weeks ago Michael Love 42k
1
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1
reply
503
views
Comment: Comment: DESeq2 step-by-step Normalization then DGE separately & Normalization methods an
10 weeks ago Michael Love 42k
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0
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344
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Comment: Comment: Abnormal Low Dispersion Gene Population in DESeq2
10 weeks ago Michael Love 42k
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0
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186
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Answer: Answer: DESeq2 , filter and theta arguments in resutlts()
10 weeks ago Michael Love 42k
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344
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Answer: Answer: Abnormal Low Dispersion Gene Population in DESeq2
10 weeks ago Michael Love 42k
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232
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Answer: Answer: Convert transcriptomic bam to genomic bam?
10 weeks ago Michael Love 42k
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1
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420
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Comment: Comment: Doing comparison of RNA-seq data using EdgeR
10 weeks ago Michael Love 42k
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192
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Answer: Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
11 weeks ago Michael Love 42k
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1
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420
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Answer: Answer: Doing comparison of RNA-seq data using Deseq2
11 weeks ago Michael Love 42k
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0
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418
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Answer: Answer: PCA of different bacterial species
11 weeks ago Michael Love 42k
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0
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257
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Comment: Comment: Clarification on Library Size Normalization After Using tximport with countsFrom
11 weeks ago Michael Love 42k
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257
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Answer: Answer: Clarification on Library Size Normalization After Using tximport with countsFrom
11 weeks ago Michael Love 42k
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204
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Answer: Answer: collapseReplicates dimension error
11 weeks ago Michael Love 42k
1
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1
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285
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Answer: Answer: DESeq2 "Contrast" option
12 weeks ago Michael Love 42k
1
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0
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338
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Comment: Comment: DESeq2 - Plot Nr. Genes vs Variance explained in PCA
12 weeks ago Michael Love 42k
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361
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Answer: Answer: Filtering and Reference Level for DESeq2
12 weeks ago Michael Love 42k
1
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1
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338
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Answer: Answer: DESeq2 - Plot Nr. Genes vs Variance explained in PCA
12 weeks ago Michael Love 42k
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0
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317
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Answer: Answer: Help with Complex DESeq2 Design
12 weeks ago Michael Love 42k
7,966 results • Page 2 of 160
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