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Comment: Comment: Spike-in normalization in EdgeR
4.3 years ago Rory Stark ★ 5.2k
1
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0
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1.8k
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Answer: Answer: DiffBind for ATAC-Seq count extraction
4.3 years ago Rory Stark ★ 5.2k
0
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0
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3.2k
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Comment: Comment: DiffBind for ATACseq without replicates
4.3 years ago Rory Stark ★ 5.2k
0
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0
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3.2k
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Comment: Comment: DiffBind for ATACseq without replicates
4.3 years ago Rory Stark ★ 5.2k
0
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0
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2.9k
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Comment: Comment: How DiffBind run PCA based on peak data?
4.3 years ago Rory Stark ★ 5.2k
0
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1
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2.9k
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Comment: Comment: How DiffBind run PCA based on peak data?
4.3 years ago Rory Stark ★ 5.2k
0
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1
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3.2k
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Comment: Comment: DiffBind for ATACseq without replicates
4.3 years ago Rory Stark ★ 5.2k
0
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1
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3.2k
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Answer: A: DiffBind for ATACseq without replicates
4.3 years ago Rory Stark ★ 5.2k
0
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1
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1.5k
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Comment: C: is it possible to analysis with more than 5 treatment with dba.overlap?
4.3 years ago Rory Stark ★ 5.2k
1
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1
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979
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Answer: A: diffbind error in sum(sapply(peaks, nrow)) : invalid 'type' (list) of argument
4.3 years ago Rory Stark ★ 5.2k
2
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0
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1.3k
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Answer: A: [dba.plotvenn] Can I move around the numbers in the diagram so that they fit ins
4.3 years ago Rory Stark ★ 5.2k
1
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0
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1.2k
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Answer: A: Error in dba.count and dba.analyze
4.3 years ago Rory Stark ★ 5.2k
0
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0
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1.2k
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Comment: C: diffbind change conditions dinamically
4.4 years ago Rory Stark ★ 5.2k
1
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1
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1.5k
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Answer: A: is it possible to analysis with more than 5 treatment with dba.overlap?
4.4 years ago Rory Stark ★ 5.2k
1
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1
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1.8k
views
Comment: C: can the counts extracted from Diffbind be used to analysis in Deseq2 as the RNAs
4.5 years ago Rory Stark ★ 5.2k
1
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2
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1.8k
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Answer: A: can the counts extracted from Diffbind be used to analysis in Deseq2 as the RNAs
4.5 years ago Rory Stark ★ 5.2k
0
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1
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1.8k
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Answer: A: DiffBind consensus peak set
4.5 years ago Rory Stark ★ 5.2k
2
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0
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682
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Answer: A: diffbind from own binding affinity table
4.5 years ago Rory Stark ★ 5.2k
0
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1
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1.4k
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Answer: A: ChIP-seq MA plot possibly skewed - how to normalise?
4.6 years ago Rory Stark ★ 5.2k
2
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1
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1.2k
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Answer: A: Cannot install DiffBind on R3.5 due to amap dependency
4.6 years ago Rory Stark ★ 5.2k
0
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0
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1.7k
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Answer: A: Deferentially binding site is the same for all the samples
4.6 years ago Rory Stark ★ 5.2k
0
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0
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1.7k
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Answer: A: Deferentially binding site is the same for all the samples
4.6 years ago Rory Stark ★ 5.2k
0
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0
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2.8k
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Comment: C: Extracting raw read counts in DiffBind consensus peak set
4.6 years ago Rory Stark ★ 5.2k
2
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0
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1.7k
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Answer: A: Deferentially binding site is the same for all the samples
4.6 years ago Rory Stark ★ 5.2k
0
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1
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1.3k
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Answer: A: Diffbind multiple groups
4.6 years ago Rory Stark ★ 5.2k
1
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1
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1.3k
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Answer: A: Diffbind for regressing multiple confounding variables (blocking factors)
4.6 years ago Rory Stark ★ 5.2k
0
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2
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1.7k
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Answer: A: Deferentially binding site is the same for all the samples
4.6 years ago Rory Stark ★ 5.2k
0
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1
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1.2k
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Answer: A: Diffbind with multiple blocking factors
4.6 years ago Rory Stark ★ 5.2k
1
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1
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1.0k
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Answer: A: Using multiple covariates in DIffBind
4.6 years ago Rory Stark ★ 5.2k
0
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0
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939
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Answer: A: DiffBind custom normalization factor
4.6 years ago Rory Stark ★ 5.2k
1
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1
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892
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Answer: A: Can I completely repeat the DiffBind results using DESeq2?
4.6 years ago Rory Stark ★ 5.2k
0
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0
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1.7k
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Comment: C: Diffbind multiple blocking factor
4.6 years ago Rory Stark ★ 5.2k
0
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0
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4.2k
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Comment: C: How to get all possible comparisons in DiffBind
4.6 years ago Rory Stark ★ 5.2k
0
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1
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2.8k
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Comment: C: Extracting raw read counts in DiffBind consensus peak set
4.6 years ago Rory Stark ★ 5.2k
0
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1
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1.7k
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Answer: A: Diffbind multiple blocking factor
4.6 years ago Rory Stark ★ 5.2k
0
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0
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2.1k
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Answer: A: DiffBind Error Processing one or more read files
4.6 years ago Rory Stark ★ 5.2k
0
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0
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1.7k
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Comment: C: Diffbind multiple blocking factor
4.7 years ago Rory Stark ★ 5.2k
0
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1
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2.2k
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Answer: A: DiffBind or csaw between different transcription factors
4.7 years ago Rory Stark ★ 5.2k
0
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1
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2.8k
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Comment: C: Extracting raw read counts in DiffBind consensus peak set
4.7 years ago Rory Stark ★ 5.2k
0
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0
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699
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Answer: A: Which internal tool does DiffBind uses to count BAM reads to calculate sizeFacto
4.7 years ago Rory Stark ★ 5.2k
0
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0
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1.6k
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Answer: A: use diffbind with normilized bedgraph files from spike ins
4.7 years ago Rory Stark ★ 5.2k
1
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2
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1.7k
views
Answer: A: Diffbind multiple blocking factor
4.7 years ago Rory Stark ★ 5.2k
0
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1
reply
4.2k
views
Answer: A: How to get all possible comparisons in DiffBind
4.7 years ago Rory Stark ★ 5.2k
0
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0
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504
views
Answer: A: DiffBind count() error or it crashes R Studio
4.7 years ago Rory Stark ★ 5.2k
1
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1
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2.8k
views
Answer: A: Extracting raw read counts in DiffBind consensus peak set
4.7 years ago Rory Stark ★ 5.2k
1
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1
reply
1.4k
views
Answer: A: how to get the estimated libSize in DiffBind
4.7 years ago Rory Stark ★ 5.2k
0
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0
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1.6k
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Comment: C: DiffBind: reverse absolute fold change in dba.report ie. abs(rep$Fold)
4.7 years ago Rory Stark ★ 5.2k
1
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1
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1.6k
views
Answer: A: DiffBind: reverse absolute fold change in dba.report ie. abs(rep$Fold)
4.7 years ago Rory Stark ★ 5.2k
1
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0
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1.4k
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Comment: C: diffBind: differentially bound sites are highly different between using EDGER an
4.8 years ago Rory Stark ★ 5.2k
0
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0
replies
3.1k
views
Comment: C: DiffBind: dealing with replicates
4.9 years ago Rory Stark ★ 5.2k
928 results • Page 8 of 19
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