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Answer: Answer: Diffbind interpretation of data - fold change
24 days ago Rory Stark ★ 5.2k
0
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1
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534
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Answer: Answer: DiffBind dba.report discrepancy
3 months ago Rory Stark ★ 5.2k
0
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0
replies
810
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Comment: Comment: DiffBind full library size not reliable
5 months ago Rory Stark ★ 5.2k
0
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0
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544
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Comment: Comment: Create merged ChIP heatmap across conditions
6 months ago Rory Stark ★ 5.2k
1
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1
reply
544
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Answer: Answer: Create merged ChIP heatmap across conditions
6 months ago Rory Stark ★ 5.2k
0
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2
replies
1.4k
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Answer: Answer: More regions in union when increasing DBA$config$mergeOverlap
9 months ago Rory Stark ★ 5.2k
2
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1
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1.1k
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Answer: Answer: [Diffbind] Blacklist error: Error: Invalid Normalization and Unable to apply Bla
9 months ago Rory Stark ★ 5.2k
0
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0
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3.4k
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Comment: Comment: Technical details of DiffBind correlation analysis
12 months ago Rory Stark ★ 5.2k
0
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0
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2.3k
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Comment: Comment: DiffBind error: diffbind DESeq2 analysis has not been run for this contrast
13 months ago Rory Stark ★ 5.2k
0
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1
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1.6k
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Answer: Answer: DiffBind returns different grey lists every time I run dba.blacklist even if I s
16 months ago Rory Stark ★ 5.2k
2
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1
reply
714
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Answer: Answer: DiffBind dba.analyze function doesn't have bSubControl option anymore?
16 months ago Rory Stark ★ 5.2k
0
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0
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1.8k
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Comment: Comment: DiffBind handling of replicates and consensus
16 months ago Rory Stark ★ 5.2k
1
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1
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1.9k
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Comment: Comment: DiffBind: dba.plotProfile(profiles)
16 months ago Rory Stark ★ 5.2k
1
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1
reply
1.0k
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Answer: Answer: DiffBind plot.profile y-axis unit and individual locus value on the heatmap
17 months ago Rory Stark ★ 5.2k
0
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0
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733
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Comment: Comment: DiffBind error
17 months ago Rory Stark ★ 5.2k
1
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0
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3.5k
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Answer: Answer: Help with error DiffBind
18 months ago Rory Stark ★ 5.2k
0
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0
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1.4k
views
Comment: Comment: DiffBind does not use DESeq2 MLE estimation of fold change
18 months ago Rory Stark ★ 5.2k
0
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0
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4.7k
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Answer: Answer: Question regarding lfcShrink types in DiffBind
18 months ago Rory Stark ★ 5.2k
0
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0
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1.5k
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Answer: Answer: DiffBind dropping peaks in ATAC-seq data
18 months ago Rory Stark ★ 5.2k
0
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0
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6.8k
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Answer: Answer: diffbind
18 months ago Rory Stark ★ 5.2k
0
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0
replies
960
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Comment: Comment: DiffBind issue with edgeR$bTagwise and DESeq2$fitType
18 months ago Rory Stark ★ 5.2k
0
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1
reply
960
views
Answer: Answer: DiffBind issue with edgeR$bTagwise and DESeq2$fitType
18 months ago Rory Stark ★ 5.2k
0
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1
reply
1.8k
views
Answer: Answer: DiffBind handling of replicates and consensus
18 months ago Rory Stark ★ 5.2k
0
votes
2
replies
6.8k
views
Answer: Answer: diffbind
18 months ago Rory Stark ★ 5.2k
1
vote
1
reply
959
views
Answer: Answer: DiffBind Using edgeR: TMM Normalisation produces identical results to Library Si
19 months ago Rory Stark ★ 5.2k
0
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0
replies
811
views
Answer: Answer: DiffBind output issues
19 months ago Rory Stark ★ 5.2k
1
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1
reply
1.2k
views
Answer: Answer: Interpret plots from DiffBind
19 months ago Rory Stark ★ 5.2k
2
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1
reply
1.3k
views
Comment: Comment: DESeq2 lfcShrink function used in DiffBind package
19 months ago Rory Stark ★ 5.2k
2
votes
0
replies
955
views
Answer: Answer: Sample sheet file for DiffBind
19 months ago Rory Stark ★ 5.2k
1
vote
0
replies
2.8k
views
Comment: Comment: Interpret plot from DiffBind
19 months ago Rory Stark ★ 5.2k
1
vote
1
reply
2.8k
views
Comment: Comment: Interpret plot from DiffBind
20 months ago Rory Stark ★ 5.2k
1
vote
1
reply
2.8k
views
Comment: Comment: Interpret plot from DiffBind
20 months ago Rory Stark ★ 5.2k
1
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1
reply
2.8k
views
Comment: Comment: Interpret plot from DiffBind
20 months ago Rory Stark ★ 5.2k
0
votes
1
reply
1.9k
views
Answer: Answer: Diffbind "No genome detected"
20 months ago Rory Stark ★ 5.2k
1
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3
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2.8k
views
Comment: Comment: Interpret plot from DiffBind
20 months ago Rory Stark ★ 5.2k
3
votes
1
reply
2.8k
views
Answer: Answer: Interpret plot from DiffBind
20 months ago Rory Stark ★ 5.2k
0
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0
replies
1.8k
views
Comment: Comment: DiffBind - Retrieving the differentially bound sites - HOW to calculate fold-cha
20 months ago Rory Stark ★ 5.2k
0
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0
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764
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Answer: Answer: dba.count with pre-defined regions produced only 10% results
20 months ago Rory Stark ★ 5.2k
0
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0
replies
1.0k
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Answer: Answer: DiffBind dba() in parallel
20 months ago Rory Stark ★ 5.2k
1
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1
reply
1.8k
views
Answer: Answer: DiffBind - Retrieving the differentially bound sites - HOW to calculate fold-cha
20 months ago Rory Stark ★ 5.2k
1
vote
0
replies
1.1k
views
Answer: Answer: Getting different differentially accessible peaks between versions
20 months ago Rory Stark ★ 5.2k
0
votes
1
reply
1.9k
views
Comment: Comment: DiffBind - question about showing significant difference on peaks with 0 fold ch
21 months ago Rory Stark ★ 5.2k
2
votes
1
reply
3.1k
views
Answer: Answer: Errors with DiffBind, Error in peaks[, pCol]/max(peaks[, pCol]) : non-numeric
21 months ago Rory Stark ★ 5.2k
0
votes
1
reply
1.9k
views
Comment: Comment: DiffBind - question about showing significant difference on peaks with 0 fold ch
21 months ago Rory Stark ★ 5.2k
0
votes
1
reply
1.9k
views
Answer: Answer: DiffBind - question about showing significant difference on peaks with 0 fold ch
21 months ago Rory Stark ★ 5.2k
0
votes
1
reply
1.8k
views
Comment: Comment: DiffBind - question on the use of filtered or unfiltered input data
21 months ago Rory Stark ★ 5.2k
1
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1
reply
1.3k
views
Comment: Comment: Positive and negative value fold value in ATAC seq using DiffBind
21 months ago Rory Stark ★ 5.2k
2
votes
0
replies
911
views
Answer: Answer: how diffbind count the reads of each peak in each sample?
21 months ago Rory Stark ★ 5.2k
0
votes
1
reply
1.8k
views
Answer: Answer: DiffBind - question on the use of filtered or unfiltered input data
21 months ago Rory Stark ★ 5.2k
1
vote
1
reply
1.3k
views
Comment: Comment: Positive and negative value fold value in ATAC seq using DiffBind
21 months ago Rory Stark ★ 5.2k
928 results • Page 1 of 19
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