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Comment: Comment: Help with Error in DiffBind
15 months ago Rory Stark ★ 5.2k
1
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3.1k
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Comment: Comment: Help with Error in DiffBind
15 months ago Rory Stark ★ 5.2k
2
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3.1k
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Answer: Answer: Help with Error in DiffBind
15 months ago Rory Stark ★ 5.2k
1
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0
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3.1k
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Comment: Comment: Help with Error in DiffBind
15 months ago Rory Stark ★ 5.2k
1
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1
reply
3.1k
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Comment: Comment: Help with Error in DiffBind
15 months ago Rory Stark ★ 5.2k
0
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0
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959
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Answer: Answer: Multiple issues reading in peak sets with Diffbind
15 months ago Rory Stark ★ 5.2k
1
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1
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3.1k
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Comment: Comment: Help with Error in DiffBind
15 months ago Rory Stark ★ 5.2k
0
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1
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1.2k
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Answer: Answer: DiffBind with ChIPseq from histone analysis: EdgeR or Deseq2?
15 months ago Rory Stark ★ 5.2k
0
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1
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1.7k
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Comment: Comment: Does DiffBind make consensus peaks sets for samples from a given condition (e.g.
15 months ago Rory Stark ★ 5.2k
2
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0
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2.0k
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Answer: Answer: DiffBind on ATAC seq data
15 months ago Rory Stark ★ 5.2k
1
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1
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3.1k
views
Answer: Answer: Help with Error in DiffBind
15 months ago Rory Stark ★ 5.2k
0
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2
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1.7k
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Comment: Comment: Does DiffBind make consensus peaks sets for samples from a given condition (e.g.
15 months ago Rory Stark ★ 5.2k
0
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0
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623
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Comment: Comment: Using DiffBind Normalization and Contrasting on Fold Change Values
15 months ago Rory Stark ★ 5.2k
0
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2
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1.7k
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Comment: Comment: Does DiffBind make consensus peaks sets for samples from a given condition (e.g.
15 months ago Rory Stark ★ 5.2k
1
vote
1
reply
623
views
Answer: Answer: Using DiffBind Normalization and Contrasting on Fold Change Values
15 months ago Rory Stark ★ 5.2k
0
votes
2
replies
1.7k
views
Comment: Comment: Does DiffBind make consensus peaks sets for samples from a given condition (e.g.
15 months ago Rory Stark ★ 5.2k
1
vote
1
reply
621
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Answer: Answer: DiffBind spike-in lib.sizes confusion
16 months ago Rory Stark ★ 5.2k
0
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1
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1.7k
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Answer: Answer: Does DiffBind make consensus peaks sets for samples from a given condition (e.g.
16 months ago Rory Stark ★ 5.2k
0
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0
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502
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Answer: Answer: DiffBind---peak region reads or all reads？
16 months ago Rory Stark ★ 5.2k
0
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0
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982
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Comment: Comment: DiffBind---Normalization problem-spike in or no spike in beforehand?
16 months ago Rory Stark ★ 5.2k
0
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1
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2.6k
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Comment: Comment: Diffbind dba.analyze Error in d$span : $ operator is invalid for atomic vectors
16 months ago Rory Stark ★ 5.2k
0
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0
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1.0k
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Answer: Answer: DiffBind differential analysis
16 months ago Rory Stark ★ 5.2k
1
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1
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982
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Answer: Answer: DiffBind---Normalization problem-spike in or no spike in beforehand?
16 months ago Rory Stark ★ 5.2k
0
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0
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701
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Answer: Answer: DiffBind- differentiate between new peaks and gain peaks
16 months ago Rory Stark ★ 5.2k
0
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0
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666
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Answer: Answer: Setting DBA$config$mergeOverlap for Diffbind
16 months ago Rory Stark ★ 5.2k
0
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1
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1.5k
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Comment: Comment: DiffBind:all samples have 0 counts for all genes.
16 months ago Rory Stark ★ 5.2k
0
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0
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611
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Answer: Answer: Diffbind (or maybe DESeq2) Fold clarification
17 months ago Rory Stark ★ 5.2k
0
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1
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1.2k
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Comment: Comment: Issue in generating a new DBA object with custom counts
17 months ago Rory Stark ★ 5.2k
0
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1
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1.2k
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Comment: Comment: Question about Diffbind counts
17 months ago Rory Stark ★ 5.2k
0
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0
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1.2k
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Comment: Comment: Question about Diffbind counts
18 months ago Rory Stark ★ 5.2k
0
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0
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1.2k
views
Comment: Comment: Question about Diffbind counts
18 months ago Rory Stark ★ 5.2k
0
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1
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1.2k
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Comment: Comment: Question about Diffbind counts
18 months ago Rory Stark ★ 5.2k
0
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1
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1.2k
views
Comment: Comment: Issue in generating a new DBA object with custom counts
18 months ago Rory Stark ★ 5.2k
0
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0
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756
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Answer: Answer: Diffbind matrix/batch effect/normalization
18 months ago Rory Stark ★ 5.2k
0
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1
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1.2k
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Comment: Comment: Question about Diffbind counts
18 months ago Rory Stark ★ 5.2k
1
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0
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4.0k
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Comment: Comment: BiocParallel error with ChIPQC
18 months ago Rory Stark ★ 5.2k
0
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0
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937
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Answer: Answer: Minor issue regarding customization of text size in Volcano and Heatmap Plots
18 months ago Rory Stark ★ 5.2k
0
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1
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4.0k
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Comment: Comment: BiocParallel error with ChIPQC
18 months ago Rory Stark ★ 5.2k
0
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0
replies
1.2k
views
Answer: Answer: Issue in generating a new DBA object with custom counts
18 months ago Rory Stark ★ 5.2k
1
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1
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1.8k
views
Comment: Comment: RiP RLE normalisation using spike-in peaks in DiffBind for ChIP-seq
18 months ago Rory Stark ★ 5.2k
2
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1
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1.8k
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Answer: Answer: RiP RLE normalisation using spike-in peaks in DiffBind for ChIP-seq
18 months ago Rory Stark ★ 5.2k
0
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0
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942
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Answer: Answer: DiffBind: Error in pv$called[, mask] : subscript out of bounds
18 months ago Rory Stark ★ 5.2k
0
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0
replies
6.2k
views
Comment: Comment: DiffBind GreyListChIP error: Error: BiocParallel errors
18 months ago Rory Stark ★ 5.2k
1
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1
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706
views
Answer: Answer: DiffBind Loss and Gain location
18 months ago Rory Stark ★ 5.2k
0
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1
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3.6k
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Comment: Comment: New in DiffBind 3.2: dba.plotProfile() - Peak profiles and profile heatmaps
19 months ago Rory Stark ★ 5.2k
0
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1
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6.2k
views
Comment: Comment: DiffBind GreyListChIP error: Error: BiocParallel errors
19 months ago Rory Stark ★ 5.2k
0
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1
reply
6.2k
views
Comment: Comment: DiffBind GreyListChIP error: Error: BiocParallel errors
19 months ago Rory Stark ★ 5.2k
0
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0
replies
1.1k
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Comment: Comment: DiffBind and peak counts as input
19 months ago Rory Stark ★ 5.2k
0
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1
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845
views
Answer: Answer: New to ChipSeq getting 0 peaks using dba()
19 months ago Rory Stark ★ 5.2k
0
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2
replies
1.3k
views
Answer: Answer: Blacklist error in DiffBind
20 months ago Rory Stark ★ 5.2k
927 results • Page 2 of 19
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