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Answer: A: DiffBind Analysis with more than 2 samples?
8.7 years ago Rory Stark ★ 5.2k
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1
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1.1k
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Answer: A: How to change peaks in global matrix in DiffBind?
8.7 years ago Rory Stark ★ 5.2k
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978
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Answer: A: About DiffBind dba.counts
8.7 years ago Rory Stark ★ 5.2k
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3.0k
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Answer: A: Work with GRanges objects in DiffBind
8.7 years ago Rory Stark ★ 5.2k
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2.7k
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Comment: C: DiffBind: dba.report reports odd FDR values
8.8 years ago Rory Stark ★ 5.2k
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1
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2.7k
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Comment: C: DiffBind: dba.report reports odd FDR values
8.8 years ago Rory Stark ★ 5.2k
1
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1
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2.7k
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Answer: A: DiffBind: dba.report reports odd FDR values
8.8 years ago Rory Stark ★ 5.2k
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4.5k
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Comment: C: dba.count error in DiffBind
8.8 years ago Rory Stark ★ 5.2k
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2
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4.5k
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Comment: C: dba.count error in DiffBind
8.8 years ago Rory Stark ★ 5.2k
1
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1
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4.5k
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Answer: A: dba.count error in DiffBind
8.8 years ago Rory Stark ★ 5.2k
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3.3k
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Answer: A: Diffbind EdgeR and DESeq2 normalization
8.8 years ago Rory Stark ★ 5.2k
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0
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3.3k
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Comment: C: Diffbind EdgeR and DESeq2 normalization
8.8 years ago Rory Stark ★ 5.2k
1
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0
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3.3k
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Answer: A: Diffbind EdgeR and DESeq2 normalization
8.8 years ago Rory Stark ★ 5.2k
0
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1
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1.2k
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Answer: A: Is it possible in DiffBind to specify sizeFactors for DESeq2 analysis?
8.8 years ago Rory Stark ★ 5.2k
2
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2.9k
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Answer: A: DiffBind "no lines available in input" error
8.8 years ago Rory Stark ★ 5.2k
0
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0
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2.3k
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Answer: A: DiffBind TMM normalization
8.8 years ago Rory Stark ★ 5.2k
0
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0
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1.9k
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Comment: C: Regarding general understanding of DiffBind
8.8 years ago Rory Stark ★ 5.2k
1
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2.0k
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Answer: A: DiffBind affinity vs occupancy Heatmaps
8.8 years ago Rory Stark ★ 5.2k
0
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0
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1.4k
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Answer: A: DiffBind: Consensus peak score ?
8.8 years ago Rory Stark ★ 5.2k
2
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0
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2.4k
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Answer: A: DiffBind dba.analyze() to return all differentially enriched peaks?
8.9 years ago Rory Stark ★ 5.2k
1
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1
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1.1k
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Answer: A: Testing for differential binding above a log2 fold change threshold using DiffBi
8.9 years ago Rory Stark ★ 5.2k
1
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2
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1.8k
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Answer: A: ChIPQC error: Error in generating sample data
9.0 years ago Rory Stark ★ 5.2k
0
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0
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2.2k
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Answer: A: Error in ChIPQC: "Error in if (res >= minval) { : missing value where TRUE/FALSE
9.0 years ago Rory Stark ★ 5.2k
0
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0
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5.1k
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Comment: C: DiffBind - Error in dba.count() when passing mask or peaks
9.0 years ago Rory Stark ★ 5.2k
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1
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1.3k
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Answer: A: Why Diffbind function dba.peakset gives 1
9.0 years ago Rory Stark ★ 5.2k
1
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0
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8.6k
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Comment: C: Diffbind: edgeR or DESeq2 ?
9.1 years ago Rory Stark ★ 5.2k
0
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0
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3.1k
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Comment: C: DiffBind Normalization by bFullLibrarySize
9.1 years ago Rory Stark ★ 5.2k
2
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1
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8.6k
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Answer: A: Diffbind: edgeR or DESeq2 ?
9.1 years ago Rory Stark ★ 5.2k
2
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0
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8.6k
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Answer: A: Diffbind: edgeR or DESeq2 ?
9.1 years ago Rory Stark ★ 5.2k
0
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0
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2.2k
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Comment: C: some help with DiffBind
9.1 years ago Rory Stark ★ 5.2k
0
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1
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3.1k
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Answer: A: DiffBind Normalization by bFullLibrarySize
9.1 years ago Rory Stark ★ 5.2k
1
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1
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2.7k
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Answer: A: Diffbind - retrieving individual sample RPKM values for differentially bound sit
9.1 years ago Rory Stark ★ 5.2k
1
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0
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2.2k
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Answer: A: blocking factors in diffbind for edgeR and DESeq2 analysis
9.1 years ago Rory Stark ★ 5.2k
0
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0
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828
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Answer: A: DiffBind with 21 contrast???
9.2 years ago Rory Stark ★ 5.2k
0
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0
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5.1k
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Comment: C: DiffBind - Error in dba.count() when passing mask or peaks
9.2 years ago Rory Stark ★ 5.2k
0
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1
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5.1k
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Answer: A: DiffBind - Error in dba.count() when passing mask or peaks
9.2 years ago Rory Stark ★ 5.2k
0
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1
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5.1k
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Answer: A: DiffBind - Error in dba.count() when passing mask or peaks
9.2 years ago Rory Stark ★ 5.2k
1
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1
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2.2k
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Answer: A: How to use DiffBind to get consensus peaks I am interested in?
9.2 years ago Rory Stark ★ 5.2k
1
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0
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1.5k
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Answer: A: question about correlation plots generated by Diffbind based on peak occupancy
9.2 years ago Rory Stark ★ 5.2k
0
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0
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2.2k
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Comment: C: Diffbind plotting on contrasts
9.2 years ago Rory Stark ★ 5.2k
1
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1
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2.7k
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Answer: A: ChIPQC and/or Diffbind - retrieving normalized read counts for peaks from single
9.2 years ago Rory Stark ★ 5.2k
1
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0
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2.7k
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Answer: A: Generating unexpected peaks from DiffBind
9.3 years ago Rory Stark ★ 5.2k
1
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0
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3.5k
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Answer: A: How to reproduce the PCA plot from DiffBind
9.3 years ago Rory Stark ★ 5.2k
0
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1
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3.5k
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Answer: A: How to reproduce the PCA plot from DiffBind
9.3 years ago Rory Stark ★ 5.2k
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1
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1.9k
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Answer: A: DiffBind: correlation heat map
9.4 years ago Rory Stark ★ 5.2k
2
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0
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22k
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Comment: C: DESeq2 for ChIP-seq differential peaks
9.4 years ago Rory Stark ★ 5.2k
2
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2
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22k
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Comment: C: DESeq2 for ChIP-seq differential peaks
9.4 years ago Rory Stark ★ 5.2k
0
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1
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22k
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Comment: C: DESeq2 for ChIP-seq differential peaks
9.4 years ago Rory Stark ★ 5.2k
0
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0
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1.6k
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Comment: C: SigCheck 2.2.0 regression: please use 2.2.1 and later!
9.4 years ago Rory Stark ★ 5.2k
0
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1
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1.6k
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Comment: C: SigCheck 2.2.0 regression: please use 2.2.1 and later!
9.4 years ago Rory Stark ★ 5.2k
928 results • Page 15 of 19
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