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2
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1
reply
980
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Answer: A: Cleaning up DiffBind counts in relation to chromosome map
7.4 years ago Rory Stark ★ 5.2k
1
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2
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1.5k
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Answer: A: Structure of DiffBind dba.count matrix equivalent to DESeqDataSetFromMatrix inpu
7.5 years ago Rory Stark ★ 5.2k
0
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0
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1.7k
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Comment: C: Unexpected results in the dba.report output files
7.5 years ago Rory Stark ★ 5.2k
0
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0
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1.7k
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Answer: A: Unexpected results in the dba.report output files
7.5 years ago Rory Stark ★ 5.2k
0
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0
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8.6k
views
Answer: A: Diffbind: edgeR or DESeq2 ?
7.5 years ago Rory Stark ★ 5.2k
2
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1
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3.3k
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Answer: A: Interaction with DESeq2 via DiffBind
7.5 years ago Rory Stark ★ 5.2k
1
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1
reply
965
views
Answer: A: DiffBind - Losing replicate information?
7.5 years ago Rory Stark ★ 5.2k
2
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1
reply
2.2k
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Answer: A: Multi-factor blocking in DiffBind
7.5 years ago Rory Stark ★ 5.2k
0
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0
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1.4k
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Answer: A: Pseudo-coloring DiffBind volcano plot
7.5 years ago Rory Stark ★ 5.2k
0
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0
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1.6k
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Answer: A: DiffBind DESeq2 MA plot skewed
7.6 years ago Rory Stark ★ 5.2k
1
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1
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2.4k
views
Answer: A: DiffBind error: diffbind DESeq2 analysis has not been run for this contrast
7.6 years ago Rory Stark ★ 5.2k
0
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0
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2.9k
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Comment: C: Problem reading Bed file using dba.count in DiffBind
7.6 years ago Rory Stark ★ 5.2k
1
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0
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1.8k
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Comment: C: Principal component analysis produced by DiffBind, but PC1 with smaller variatio
7.6 years ago Rory Stark ★ 5.2k
1
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0
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3.1k
views
Answer: A: DiffBind broad and narrow peak identification
7.6 years ago Rory Stark ★ 5.2k
0
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0
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2.6k
views
Answer: A: MA plot DiffBind in ggplot2
7.6 years ago Rory Stark ★ 5.2k
0
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0
replies
905
views
Answer: A: diffbind : Is it possible to analyze one sample only ?
7.6 years ago Rory Stark ★ 5.2k
1
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0
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1.0k
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Answer: A: Diffbind Consensus vs Differential peak sets from same count
7.6 years ago Rory Stark ★ 5.2k
8
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2
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6.1k
views
Answer: A: How to select summit size for histone ChiP-Seq in Diffbind
7.6 years ago Rory Stark ★ 5.2k
0
votes
1
reply
2.9k
views
Answer: A: Problem reading Bed file using dba.count in DiffBind
7.6 years ago Rory Stark ★ 5.2k
1
vote
1
reply
1.8k
views
Answer: A: Principal component analysis produced by DiffBind, but PC1 with smaller variatio
7.6 years ago Rory Stark ★ 5.2k
1
vote
2
replies
3.1k
views
Answer: A: How DiffBind run PCA based on peak data?
7.6 years ago Rory Stark ★ 5.2k
0
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0
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2.2k
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Comment: C: Diffbind: dba.plot retrieve variance explained
7.6 years ago Rory Stark ★ 5.2k
2
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0
replies
2.2k
views
Answer: A: Diffbind: dba.plot retrieve variance explained
7.6 years ago Rory Stark ★ 5.2k
3
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1
reply
3.1k
views
Answer: A: How DiffBind run PCA based on peak data?
7.6 years ago Rory Stark ★ 5.2k
0
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1
reply
2.2k
views
Comment: C: Diffbind: dba.plot retrieve variance explained
7.6 years ago Rory Stark ★ 5.2k
2
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1
reply
2.6k
views
Answer: A: MA plot DiffBind in ggplot2
7.6 years ago Rory Stark ★ 5.2k
2
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1
reply
2.0k
views
Answer: A: There is no dba.plotVolcano function in DiffBind and how to upgrade DiffBind to
7.6 years ago Rory Stark ★ 5.2k
1
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0
replies
2.6k
views
Comment: C: DiffBind consensus peak help
7.6 years ago Rory Stark ★ 5.2k
0
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0
replies
1.4k
views
Answer: A: DiffBind dba.plotHeatmap Error in hclustfun(distfun(x))
7.6 years ago Rory Stark ★ 5.2k
0
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0
replies
1.2k
views
Answer: A: Diffbind: Does Heatmap use count or score? and for which intervals ?
7.6 years ago Rory Stark ★ 5.2k
0
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0
replies
942
views
Comment: C: comparing CHIP-seq with published data using Diffbind
7.6 years ago Rory Stark ★ 5.2k
1
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1
reply
1.2k
views
Answer: A: DiffBind masks for counts
7.7 years ago • updated 7.6 years ago Rory Stark ★ 5.2k
0
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1
reply
2.6k
views
Answer: A: DiffBind consensus peak help
7.6 years ago Rory Stark ★ 5.2k
1
vote
2
replies
2.0k
views
Answer: A: There is no dba.plotVolcano function in DiffBind and how to upgrade DiffBind to
7.7 years ago Rory Stark ★ 5.2k
0
votes
1
reply
942
views
Answer: A: comparing CHIP-seq with published data using Diffbind
7.7 years ago Rory Stark ★ 5.2k
1
vote
1
reply
1.6k
views
Answer: A: How to set DiffBind dba.plotHeatmap colSideCols option
7.7 years ago Rory Stark ★ 5.2k
1
vote
0
replies
1.4k
views
Answer: A: DiffBind dba.plotHeatmap Error in hclustfun(distfun(x))
7.7 years ago Rory Stark ★ 5.2k
0
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0
replies
1.5k
views
Answer: A: diffbind Error: cannot allocate vector of size 1024.0 Mb
7.7 years ago Rory Stark ★ 5.2k
0
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1
reply
2.2k
views
Answer: A: Diffbind: dba.plot retrieve variance explained
7.7 years ago Rory Stark ★ 5.2k
2
votes
1
reply
1.7k
views
Answer: A: DiffBind contrasts issue
7.7 years ago Rory Stark ★ 5.2k
0
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0
replies
2.1k
views
Answer: A: How to set the parameter "fragmentSize" in DiffBind and set parameter for paired
7.7 years ago Rory Stark ★ 5.2k
0
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0
replies
2.1k
views
Answer: A: How to set the parameter "fragmentSize" in DiffBind and set parameter for paired
7.7 years ago Rory Stark ★ 5.2k
0
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0
replies
2.4k
views
Answer: A: Diffbind heatmap color change
7.7 years ago Rory Stark ★ 5.2k
0
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0
replies
860
views
Answer: A: how overlap between peaks is calculated in diffbind
7.8 years ago Rory Stark ★ 5.2k
0
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0
replies
2.2k
views
Answer: A: PCR bottleneck coefficient (PBC)
7.8 years ago Rory Stark ★ 5.2k
0
votes
0
replies
531
views
Answer: A: Question: DiffBind dba.report() output: the output when setting bCounts=TRUE
7.8 years ago Rory Stark ★ 5.2k
0
votes
0
replies
925
views
Answer: A: Diffbind - "dba.report" showing values with less significant figures?
7.8 years ago Rory Stark ★ 5.2k
0
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0
replies
1.2k
views
Comment: C: Diffbind: retrieve raw peaks per sample
7.8 years ago Rory Stark ★ 5.2k
0
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0
replies
3.5k
views
Comment: C: Technical details of DiffBind correlation analysis
7.8 years ago Rory Stark ★ 5.2k
1
vote
0
replies
2.4k
views
Comment: C: DiffBind : More fragment sizes than libraries
7.9 years ago Rory Stark ★ 5.2k
928 results • Page 12 of 19
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